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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGATCTTCTCTCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACCAAATgtaaaattactctgccttattttttttttgtcctttttttagttgttgtctatggtttaaatgattgactgcacccaatttctcatgaaattaggtgata...

Basic information

species Glycine max
transcript GLYMA05G25980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G100639_T01 (Zea mays), 5'ss of exon 3
GGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGATCTTCTCTCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACCAAATgtaaaattactctgccttattttttt---tttgtcctttttttagttgttgtctatggtttaaatgattgactgcacccaatttctcatgaaattaggtgata
|| ||    || || || |  |  | | | |||||||||||||||||  | ||    ||||| ||  |||||||||| ||||||||||| ||||||||||||||     | || |    |||       | |  |   || |    || |  ||    |     | |||    | ||    |||  ||||  |  || |    
GGCTTCTCGGGTCCGTTCGGGTTCCACAGGGTCACGCCCAGGGATCTCATGTCCTCCTTCATCGGCACCATGGTCTGCGTTGAGGGCATCGTCACCAAATgtaacggctcacttctccctttcagcagatgtaccacgttatgctctggttcctgccatactgcttattcggcgaactttgttta-catggtaccagattg--

upper sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G162445_T01 (Zea mays), 5'ss of exon 3
GGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGATCTTCTCTCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACCAAATgtaaaattactctgccttattttttttttgtcctttttttagttgttgtctatggtttaaatgattgactgcacccaatttctcatgaaattaggtgata---
|| ||    || || || |  |  | | | |||||||||||||||||  | ||    ||||| ||  |||||||||| ||||||||||| ||||||||||||||  |  |  | |||| |       | | ||   || | ||  |  |||  ||||  | | ||  | |||        |  |      | |   | ||   
GGCTTCTCGGGTCCGTTCGGGTTCCACAGGGTCACGCCCAGGGATCTCATGTCCTCCTTCATCGGCACCATGGTCTGCGTTGAGGGCATCGTCACCAAATgtaatgtctcattccctt-tcagcagatggaccgcattgttgtcatgctct--ggttccactcatatattgcttgttgggtgcccgtctttcacacggtacca

upper sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G46280.1 (Arabidopsis thaliana), 5'ss of exon 3
GGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGATCTTCTCTCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACCAAATgtaaaattactctgccttattttttttttgtcctttttttagttgttgtctatggtttaaatgattgactgcacccaatttctcatgaaattaggtgata-
|| ||||||||   |||||||||||||  ||| || || || || ||||||||| | || || || || |||||||||||||||||||||||||||||||||||  | | ||    | | | | ||  | | ||||| ||   | |  | | || ||||  |    || |     |  | |  ||     || | |   | 
GGTTTTGAAGGTTATTTTGTTTCTCGCGTTGTTACTCCTAGAGAGCTTCTCTCTGATTTTATTGGATCTATGGTCTGTGTTGAGGGCATTGTCACCAAATgtaagctca-tcattttcactctattcctctgcttttcttctgtttcctttgtgttttacgtagaagattttgaacc-tctgacacatgctttgctttcag

upper sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 3
GGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGATCTTCTCTCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACCAAATgtaaaattactctgcc--ttattttttttttgtcctttttttagttgttgtctatggtttaaatgattgactgcacccaatttctcatgaaattaggtgata
|| |||||||| ||||||||||| || ||||| || || || ||||||||||||   ||||| || ||||||||||||||||||||||||||||| |||||||   |  || |  |  |  ||||||||| |   || || || || || |  |    | |  | | |    | ||  || |  |||     | |     | 
GGCTTTGAAGGTCCTTTTGTTTCCCGACGTGTTACACCGAGAGATCTTCTCTCTAGCTTCATTGGATCCATGGTCTGTGTTGAGGGCATTGTCACAAAATgtactttctctttaacattcctttttttttggatattcttatatttattttgaagaagtaattttaatcttggtacttaactg-tcactgcttcaatcagt-