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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttctttcactgtcactataaagcaaattatattgactttaactgcttgggttctatcaagtgttaaagtttattggtggaatgtatatatcgag...

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207718601|gb|GD700495.1|GD700495
EST:     ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT                         TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: gi|22524348|gb|BU083159.1|BU083159
EST:     ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT                         TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: gi|193477710|gb|FK439149.1|FK439149
EST:     ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT                         TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: gi|193310780|gb|FK277560.1|FK277560
EST:     ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT                         TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: gi|207692007|gb|GD673924.1|GD673924
EST:     ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT                         TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: gi|193686673|gb|FK626080.1|FK626080
EST:     TCTCCTCCCAAAGT                         TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: TCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttctttcactgtcactataaagcaaattatattgactttaactgcttgggttctatcaagtgttaaagtttattggtggaatgtatatatcgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg