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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggtaaacactaatatgagtctagctacccttttatatttcctttatattctcttcatgcctgcaatttttttatcaagtgtaaaaatctgtgctt...

Basic information

species Glycine max
transcript GLYMA05G24650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24650.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g12840.1 (Oryza sativa), 5'ss of exon 3
TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggta-aacactaatatgagtctagctacccttttatatttcctttatattctcttcatgcctgcaatttttttatcaagtgtaaaaatctgtgctt------
      ||  | |||||| |  || |||||||| || |||||||| ||||| || ||||||||||| || ||| |||| || ||||||||||||||||||||| |||||  |  | | |||      | | |   |  | |  |    || | |  | |  ||| |  |  || |||  | | || | |  |||| |  ||      
------AGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGgtatgattccactatattggcatccatg-tgctgtgatcaaattgtttagtatatatggcctctgttgtttcctgaggtttgatcatctctcattgtggtc

upper sequence: GLYMA05G24650.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g36000.1 (Oryza sativa), 5'ss of exon 3
TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggtaaacactaatatgagtctagctacccttttatatttcctttatattctcttcatgcctg-caatttttttatcaagtgtaaaa-atctgtgctt-----
       |  | ||| || |  || |||||||| ||||||||||| ||||| || || ||||||||||| || ||||| || |||||||||||||| |||||  ||||| ||| | || |  || |  |    | ||| | ||    |  |  |   || |    |  |||||| |   |   |  ||    |   ||||||     
------GGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGgtatacattgatttt-gtttgccagtacgtttgtgttcatatgttgcttaatttacatttaacaatttctaagttgtggttactttactggtgcttccctt

upper sequence: GLYMA05G24650.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G055667_T01 (Zea mays), 5'ss of exon 3
TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggtaaacactaatatgagtctagctacccttttatatttcctttatattctcttcatgcctgcaatttttttatcaagtgtaaaaatctgtgctt----------
      ||  | ||| || || || |||||||||||||||||||| ||||| || || |||||||| || ||| |||| || ||||||||||||||||||||  ||||| | | || | |   | |   | || |||| |  | |||  ||    | || |    ||||||| ||| ||||  | |  | || |   ||           
------AGAATATGCTGTTGCAATCAAGAATGTGACAATAAATGATAACTTCTTCCCAGGGCATTTCCCTGAACGACCCATAATGCCTGGTGTTCTCATGGTCGAGgtatataatattctcgttattttt-cctttttttgatacctacattgcttattgaga--tgcaattgtttcatcat-tattgacatgtagactaaagtgatgtt

upper sequence: GLYMA05G24650.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0357g00020.t01 (Vitis vinifera), 5'ss of exon 3
TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggtaaacactaatatgagtctagctaccc-ttttatatttcctttatattctcttcatgcctgcaatttttttatcaagtgtaaaaatctgtgctt-------
        | || ||||| || || ||||||||||| ||||| || ||||| ||||||||||| || || || || ||||| ||||||||||| ||||||||| ||||||    |  |    | | | || |   || |  ||||   ||  |||  ||  |      ||     | | | ||   |||| | ||   | |       
------GATCTCAGCAGTAGCAATTAAGAATGTGACTATAAACGATAACTTCTTTCCTGGGCACTTCCCTGAGAGGCCAATTATGCCTGGTGTGCTCATGGTTGAGgtaatt--tgcttattgccaaacttcatgttcttcatttgaattcaatttactagaaaataacagaaaatgtttgaaaaataaagaactcaacatatttgtg

upper sequence: GLYMA05G24650.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ31102 (Selaginella moellendorffii), 5'ss of exon 2
TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggtaaacactaatatgagtctagctacccttttatatttcctttatattctcttcatgcctgcaatttttttatcaagtgtaaaaatctgtgctt
       ||  | ||||| |  || || || ||||| || |||||||| || || || || || ||||| || ||||| ||||||||||| |||||||||||| ||||| | |   ||  ||       |   |||   || |||     || |   ||||||| |  || | || | || ||                 
------TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatgagacagagaattttcttgcgtagttc-----taatacgttcatgcttttaaatcttctgtccag-----------------

upper sequence: GLYMA05G24650.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ06529 (Selaginella moellendorffii), 5'ss of exon 3
TCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGgtttaggtaaacactaatatgagtctagctacccttttatatttcctttatattctcttcatgcctgcaatttttttatcaagtgtaaaaatctgtgctt
       ||  | ||||| |  || || || ||||| || |||||||| || || || || || ||||| || ||||| ||||||||||| |||||||||||| ||||| | |   ||  ||    ||          | | ||   ||   |  |  |||||| |   |  ||| | || ||                 
------TGTCACGGCAGTAGGGATTAAAAACGTGACGATCAATGACAATTTCTTCCCCGGCCACTTTCCGGAGAGACCGATCATGCCTGGAGTTCTCATGGTTGAGgtagaaaacgatgaga---cag----------agaattttcttgcgtagttctcatgcttttgaaatttctgtccag-----------------