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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGAGACTTCAGTGACTCTGAAGAAGATTCTACTATTATTTGTTCTTGCTGGTATTTCCATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAGgttgctttttgctgttgtgcatgtattctaattactaatgtcatacttgtattgtcatcttgttgcttgtgtaccgggccactgttgcctttcaataaccactacttttctctatttcttcatattaattcttactttatatcttttttattctgcag

Basic information

species Glycine max
transcript GLYMA05G24530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24530.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0142g00250.t01 (Vitis vinifera), 5'ss of exon 3
CTAGAGACTTCAGTGACTCTGAAGAAGATTCTACTATTATTTGTTCTTGCTGGTATTTCCATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAGgttgctttttgctgttgtgcatgtattctaattactaat--gtcatacttgtattgtcatcttgttgcttgtgtaccgggccactgttgcctttcaataaccactacttttctctatttcttcatatta-attcttactttatatcttttttattctgcag
|| ||||||||| |||||||||| ||| | || ||| | || || |||||||||| | | ||||| || ||| | ||||||||||| || |||||||||||||  |   |||| |    | | ||||||  |||  | |  | || | ||| ||  |     |  | |    | |   | |   |       || | | |      ||      || || |    ||   ||| |  |       |  |||| || | |||
CTTGAGACTTCACTGACTCTGAAAAAGCTGCTTCTAATGTTAGTACTTGCTGGTACTGCTATGGTAATAGCTGATGGGGTTGTTACGCCTGCAATGTCAGgtttttacatgctatc--tcctttattctttttagcacttggacaaaattgaataat-gcaataattcaaacgaaaaagtcattttccatgcttaattcattgtagctggagcttagttttgacgataggattgtcccccctctcccctttttttgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193652021|gb|FK597725.1|FK597725
EST:     GTATTTTCCTATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAG                         TACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAAGCAA
genomic: GTA-TTTCC-ATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAGgttgcttttt ... tattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATT-AAGCAA
EST: gi|193564929|gb|FK520114.1|FK520114
EST:     GGTATTTTCCATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAG                         TACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG
genomic: GGTA-TTTCCATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAGgttgcttttt ... tattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG