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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACCTCAATTGAGAGCTGTTGTTCTTCACAGTCCCATACTTTCAGGCTTAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGgttagcctaatgttttggtttctaatcactagttgacatttctaatcaaatactgatgatttacaggcacatgaattccttaatctaatcagatactgctttgtgttgatgtgcag

Basic information

species Glycine max
transcript GLYMA05G24080.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24080.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
ATTACCTCAATTGAGAGCTGTTGTTCTTCACAGTCCCATACTTTCAGGCTTAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGgttagcctaatgttttggtttctaatcactagttgacatt-tctaatcaaatactgatgatttacaggcacatgaattcctta-atctaatcagatactgctttgtgttgatgtgcag
||| | ||   |  ||||||||||  | |||||||| ||||| ||||| || || || |||||||| || || ||||  ||||||||||||||||||||||||       |||| |  ||| | ||  |  |||||  |    | ||| | || |  |    | | | |   |    |  | | |   ||         | | |   ||||  | |||
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtt-------tgttatccttttttattccatgttgatttagcttgatctattatttcttgcatgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: GLYMA05G24080.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0219g00290.t01 (Vitis vinifera), 5'ss of exon 3
ATTACCTCAATTGAGAGCTGTTGTTCTTCACAGTCCCATACTTTCAGGCTTAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGgttagcctaatgttttggtttctaatcactagttgacatttctaatcaaatac-tgatgatttacaggcacatgaattc---cttaatctaatcagatactgctttgtgttgat---gtgcag
  | ||||| || |||||||||||| | || ||||| ||||||||||| ||||| || |||||||| ||||| || |  |||||||||||||| ||||||||    ||  | ||     |    | || || || | || | ||   | |||  |  | ||| | |   |  || |||     || ||  |||    | ||| ||| |||||||   ||||||
GCTGCCTCAGTTAAGAGCTGTTGTTTTGCATAGTCCTATACTTTCAGGTTTAAGAGTTATGTATCCTGTAAAGCGAACATACTGGTTTGACATTTATAAGgt--atct--tcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26056221|gb|CA799135.1|CA799135
EST:     TAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAG                         AATATCGACAAAATTCCACTCGTTAATTGCCCTATTCTCATAATTC--
genomic: TAAGGGTCATGTATCCAGTAAAACGTAGTTACTGGTTTGACATATATAAGgttagcctaa ... tgatgtgcagAATATCGACAAAATTCCACTCGTTAATTGCCCTATTCTCATAATTCAT