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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaactttatttgcttcatttaggtcacaaaccaacatgtggcttgatattatttgccgtatattttgacag

Basic information

species Glycine max
transcript GLYMA05G20940.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208210003|gb|GE005576.1|GE005576
EST:     ACAAGCCTTTCAGTAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: ACAAGCCTTTCAG-AGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|7028495|gb|AW458278.1|AW458278
EST:     AGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: AGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|58017620|gb|CX704362.1|CX704362
EST:     AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|208178246|gb|GD976533.1|GD976533
EST:     AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATAGGAAAGTTAGAAGAAAGTTGCTT
genomic: AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGAT-GGAA-GTT-GAAGAAAGTTGCTT
EST: gi|33389247|gb|CA852454.1|CA852454
EST:     GAGAGCACCACCAGNAAATCACAAGCCTTTCAGAGGACTGAAATTTTCGG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: GAGAGCACCACCAG-AAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|58014302|gb|CX701044.1|CX701044
EST:     AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|207708887|gb|GD691549.1|GD691549
EST:     ACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: ACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaactttatttgcttcatttaggtcacaaaccaacatgtggcttgatattatttgccgtatattttgacag

- - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - AGAGGA