Sequence
atgc intronic sequence ATGC exonic sequenceGTGGATTTGACACAGCACATGCGGCTGCTCGgtgagcccttgcccccctcctctagtattataccaagcttgtaatataactttttctatgtcttgaattgaacctaatctaattatcaaatattataaatcacatttcgttgtgggggaatgtgaggctcaaagaaaattgtgtattttccatctctctttgcag
Basic information
species | Glycine max |
transcript | GLYMA05G18170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G18170.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G67180.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGATTTGACACAGCACATGCGGCTGCTCGgtgagcccttgcccccctcctctagtattataccaagcttgtaatataactttttctatgtcttga-attgaacctaatctaa-ttatcaaatattataaatcacatttcgttgtgggggaatgtgaggctcaaagaaaattgtgtattttccatctctctttgcag
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GTGGATTTGACACTGCACATGCTGCTGCTCGgtatattttcgaacctag---ctaacgcattactatactagtatcattttttgttcattattttgttattggctataatatgggtcaataaatatttgagacag---------------------------------------------------------------
upper sequence: GLYMA05G18170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g00220.t01 (Vitis vinifera), 5'ss of exon 3
GTGGATTTGACACAGCACATGCGGCTGCTCGgtgagcccttgcccccctcctctagtattataccaagcttgtaatataactttttctatgtcttgaattgaacctaatctaattatcaaatattataaatcacatttcgttgtgggggaatgtgaggctcaaagaaaattgtgtattttccatctctctttgcag
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GTGGATTTGACACCGCACATGCAGCTGCTCGgtgagctctt--------cctcta-tattccttccaacttttgtt----cgtttcatacg---aaaaatgaa--tgagcgaatga--aaattttctaa----------------ggagaatgtgatactgaaagagattttttttcttcttttctttttcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193446370|gb|FK415785.1|FK415785EST: TCTAGGTGGATTTGACACAGCACATGCGGCTGCTCG TGCATATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCGGACATTAA
genomic: TCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGgtgagccctt ... ctctttgcagTGCATATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCGGACATTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGATTTGACACAGCACATGCGGCTGCTCGgtgagcccttgcccccctcctctagtattataccaagcttgtaatataactttttctatgtcttgaattgaacctaatctaattatcaaatattataaatcacatttcgttgtgggggaatgtgaggctcaaagaaaattgtgtattttccatctctctttgcag
- - - - - - - - - - - GCTGCT