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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgacgttaaccccttatcgtattttgttttattttttacatgttggtgctttttttgctctttgttttgattttgtatatacccgaaagggatt...

Basic information

species Glycine max
transcript GLYMA05G14330.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 3
GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgta--ctttgacgttaaccccttatcgtattttgttttattttttacatgttggtgctttttttgctctttgttttgattttgtatatacccgaaagggatt
|| || |||||||||||  |||| || |||||| | |||||||||||||||||||| || || || ||||| || ||||| ||||||   ||| | | |  | | | ||  |  || |  ||   | || | | |   |   ||  |   | || ||   || ||| |  |||    ||   |   
GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaactttttatgcttgctcataatttttattcgagttcagtgtttcttttctctttgttagtatttgttggtggagaatttttcaatatttaaatttgg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23726817|gb|BU761411.1|BU761411
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|23726961|gb|BU761493.1|BU761493
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|192295112|gb|FG986831.1|FG986831
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|192295381|gb|FG986995.1|FG986995
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|192320029|gb|FK013357.1|FK013357
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|192324604|gb|FK018730.1|FK018730
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|151400518|gb|EV270332.1|EV270332
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|15200376|gb|BI424317.1|BI424317
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|298165082|gb|HO011131.1|HO011131
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|213590582|gb|DB973327.1|DB973327
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|14205743|gb|BG839421.1|BG839421
EST:     TTCCGGGTTCCAATAGAAGAATKCACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|151409026|gb|EV278834.1|EV278834
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGGTTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|208112458|gb|GD910181.1|GD910181
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|254338069|gb|GR849701.1|GR849701
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|151410622|gb|EV280437.1|EV280437
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGGTGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|16348120|gb|BI973715.1|BI973715
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|192303719|gb|FG994557.1|FG994557
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|151411428|gb|EV281239.1|EV281239
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|298162963|gb|HO011696.1|HO011696
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|298174725|gb|HO014756.1|HO014756
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCCGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|298195782|gb|HO044173.1|HO044173
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: gi|193423628|gb|FK387293.1|FK387293
EST:     TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG                         GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG