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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGgtatgcctacataaattttgtacttactggtttttgttgagtcttagctggtagctcttaatggaaaagtttgttacttatagatttgtggaattttgca...

Basic information

species Glycine max
transcript GLYMA05G09120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09120.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGgtatgcctacataaattttgtacttactggtttttgttgagtcttagctggtagctcttaatggaaaagtttgttacttatagatttgtggaattttgca---
 || ||||      ||| ||| ||||||||||  | |||||||| ||||| ||||||||||| ||  | || | ||||||||| |||||||||||||| |||| |  | |   | ||    || |  | | ||   | |    |||  |||| | | |          |  |  ||  |||  ||| ||  |  |   |    
AGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGgtaagattgct--atttggaaacctggttgcttc-atgggcatttacatggtggatttctgcaatccggaataataactattcattagttcatatacaccatg

upper sequence: GLYMA05G09120.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165231_T01 (Zea mays), 5'ss of exon 3
TGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGgtatgcctacataaattttgtacttactggtttttgttgagtcttagctggtagctcttaatggaaaagtttgttacttatagatttgtggaattttgca---
 || | ||      ||| ||  | || |||||  | || ||||||||||| |||||||| |||||  | |||||||||||||| ||||||||||| || |||| | |||   |  || ||  || |    |   || |   |||    |  |  ||  |  |    | ||||   |  | |   |  ||    || | |    
AGCCTTGAGCCTCGTGTAGCAGTGGGGTTTGCATTGGACATTGCCCGAGCTATGGAATGCTTACATGCACATGGGATCATTCATCGTGATCTTAAGCCTGgtaagactagtcattttgtgatctgatcattgcatgcta--tctatattattcactgcttttctccatgtttaccatgtgtccgtc-gttactttcttcggaa

upper sequence: GLYMA05G09120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09290.t01 (Vitis vinifera), 5'ss of exon 3
TGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGgtatgcctacataaa-----ttttgtacttactggtttttgttgagtc--ttagctggtagctcttaatggaaaagtttgttacttatagatttgtggaattttgca
|||||||||       | ||  |||| ||||||||||||||||| ||||||||||||||  | ||||||||||||||||| || |||||||| ||||| |||| || |     ||      |||| | | |  |  | |  | || |   ||||      | | |  ||    || |      |     ||     || |       
TGCTTGGATGCTCGAATTGCAGTTGGTTTTGCTCTTGATATTGCTCGAGCAATGGAATGCCTGCACTCTCATGGGATCATACATCGTGATCTGAAACCTGgtaagctttttagaagacccctttgaattcagagaatatcttagatttaattagacaagggttttggattctcaaatagacctcactgggaaaacaggca-------