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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattttgatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatag

Basic information

species Glycine max
transcript GLYMA05G08220.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08220.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 4
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattttgatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatag----------------------------------------------------
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||    |||| |  |  |||  ||      |  |  || |   |  | |  | ||||  | ||    |||   ||   |   | ||||                                                    
ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctt-tcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttt-tgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag

upper sequence: GLYMA05G08220.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ14522 (Selaginella moellendorffii), 5'ss of exon 2
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattttgatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatag
  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||||    | | |        || |   ||| | ||||  || ||   |   ||    ||| | ||   | |   || ||  |||  ||
GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactct--------tccta--gcacattttttccttcttaaac--accgaatgaaa-cagtggttttctttgtttttcgcag

upper sequence: GLYMA05G08220.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ26224 (Selaginella moellendorffii), 5'ss of exon 2
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattttgatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatag
  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||||    | | |        || |   ||| | ||||  || |||  |   ||    ||| | ||   | |   || ||  |||  ||
GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactct--------tccta--gcacatttttttcttctaaaac--accgaatgaaa-cagtggttttctttgtttttcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21600809|gb|BQ611140.1|BQ611140
EST:     CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG                         GAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
genomic: CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattt ... tgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
EST: gi|151412097|gb|EV281909.1|EV281909
EST:     CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG                         GAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
genomic: CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattt ... tgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT