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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATTAAGGAGTTCGATAAAGAAGTCAAAACATTGGAGAATAGCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATGgtgagatgtttatagatgttttctccgttgatatctcaattgctgctgcttcatattttaaggtttattggtttccatatcaaccttactaacaagcattttccattatttttgcag

Basic information

species Glycine max
transcript GLYMA05G05710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G05710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g00140.t01 (Vitis vinifera), 5'ss of exon 3
GCTTATTAAGGAGTTCGATAAAGAAGTCAAAACATTGGAGAATAGCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATGgtgagatgtttata----gatgttttctccgttgatatctcaattgctgctgcttcatattttaaggt-----ttattggtttcc---atatc-aaccttactaacaagcatttt--ccattatttttgcag
||| ||||| || || |||| |||||| ||    ||||||| |||   ||||  |||||||||||| ||| |||||||||||||||| ||||||||  | | |||        || | |  |  || |  |||  ||||| ||| |  | || || |||  |     |||||  |   |   ||||| ||  |  ||    |    |||  |  || | |||||||
GCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATGgtaggctttttgcctcgtaatatctgattagtcggaatccaaattgttgcag--taatgttgtaacatgcacattatttatcctctgcatatccaaattctctgctgaatgcttttgctgttttctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924100|gb|AW830126.1|AW830126
EST:     GCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATG                         ATCAAAGAGTTGAACTCATATGTTGGTTTGAACAAGCA
genomic: GCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATGgtgagatgtt ... atttttgcagATCAAAGAGTTGAACTCATATGTTGGTTTGAAAAAGCA