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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCATTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactgatttcacaacatagtactttcctgtccatttattttataaataatagcattcaatagtttcatatatcctttctcattggtccactgttgtttcacag

Basic information

species Glycine max
transcript GLYMA05G05460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G05460.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0204g00150.t01 (Vitis vinifera), 5'ss of exon 3
TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCATTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactg-atttcacaacatagtactttcc-tgtccatttattttataaataatagcattca-atagtttcatatatcctttctcattggtccactgttgtttcacag
|||||| |||||| | ||| | |||||||| || ||||| || ||||||||||| ||||| || |||||||||||||| || |||||||| ||| | || ||  |  ||| |  ||  || ||  |    |||||  |     ||  || ||||  | ||  | |  ||  | || | |   |  |   | |  | || |       
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAAgttttccattcctgaatctaatatgtagtatgtcctctccagctaacaaaaatatgactcttagacctttctttaacttgaattttactttccttattct-------

upper sequence: GLYMA05G05460.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 1
TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCATTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactg-atttcacaacatagtactttcctgtccatttattttataaataatagc-attcaatagt-ttcatatatcct---ttctcattggtccactgttgtttc--acag
|||||| |||||| | ||| | |||||||| || ||||| || ||||||||||| ||||| || |||||||||||||| || |||||||| ||| | |||||  |  ||| |  ||  || ||  |       | |||     | ||| ||||   | ||  |    ||  | || | |   || |  ||     ||| | | ||   ||||
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAGgttttccattcctgaatctaatatgtagtgtgtcctttccaggaaaaaaaatattgactctttgacctttctttaacttgaattttactttccttactctcgatttggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820671|gb|BE556181.1|BE556181
EST:     GGCATTCAAAAGGATGTTCCCTGCCCCTGATATGGGGAACTAATGCTCAG                         ACCATGGCATGGATTCTCGATGAGTATTCAAAGTTTCATGGGCATTTCCCC
genomic: GGCATTCAGAGGGATGTTCC-TGCCCCTGATATGGG-AACTAATGCTCAGgtactgattt ... tgtttcacagACCATGGCATGGATTCTCGATGAGTATTCAAAGTTTCATGGGCATT-CACC