Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAgtacttttctttctcttcttaataatcaatatttctactagtccttagtaaaagaaaaagcttcatcatccttgaaacaaaatacttgtttatttgaaaaaaatttggcaagtaataaacgacgatgatgattcag
Basic information
species | Glycine max |
transcript | GLYMA05G05430.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G05430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0309g00090.t01 (Vitis vinifera), 5'ss of exon 2
TTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAgtacttttctttctcttct-taataatcaatatttctactagtccttagtaaaagaaaaagcttcatcatccttgaaacaaaatacttgtttatttgaaaaaaatttggcaagtaataaacgacgatgatgattcag
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ATGTGGCTTTGGCGAATATGGAAGAAATGTCAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGGATGGGACTGGCTGCGGTGCATGCTATCAGgtaattaaaatatacgagtgtgatgcgatgaaattttaagggtgtctg---agggaatattcttcat-------gcaataatg-acttgt-------aaatagaccttgagaataagc-------------------
upper sequence: GLYMA05G05430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0309g00050.t01 (Vitis vinifera), 5'ss of exon 2
TTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAgtacttttctttctcttcttaataatcaatatttctactagtccttagtaaaagaaaaagcttcatcatccttgaaacaaaatacttgtttatttgaaaaaaatttggcaagtaataaacgacgatgatgattcag
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ATGTGGCTTTGGCGAATATGGAAGAAGTGTCAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGGATGGGACTGGCTGCGGTGCATGCTATCAGgtaatt------------gaaatatacgagtgtgatgcgatgaaatattaagggtgtctgagggaatattcttcatgcaa--taatgacttgt---aaatagaccttgagaataagc-------------------
upper sequence: GLYMA05G05430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s1455g00010.t01 (Vitis vinifera), 5'ss of exon 2
TTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAgtacttttctttctcttcttaataatcaatatttctactagtccttagtaaaagaaaaagcttcatcatccttgaaacaaaatacttgtttatttgaaaaaaatttggcaagtaataaacgacgatgatgattcag
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ATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATGCTATCAGgtaat-----taaactatatgagagt--gtgatgtgatgaaattttaagggtgtctgagggaatattcttcatgcaataatg-acttgt-------aaatagaccttaagaataa---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192315320|gb|FK009178.1|FK009178EST: GAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAA GCAAGGTGCAAAATACCACAATATTGTGATGAGAATGGAGCACATGTGGTG
genomic: GAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAgtacttttct ... gatgattcagGCAAGGTGCAAAATACCACAATATTGTGATGAGAATGGAGCATATGTGGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAgtacttttctttctcttcttaataatcaatatttctactagtccttagtaaaagaaaaagcttcatcatccttgaaacaaaatacttgtttatttgaaaaaaatttggcaagtaataaacgacgatgatgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG