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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgttatgtgttgttacag

Basic information

species Glycine max
transcript GLYMA05G04870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctgg--atatgaattgctgactggttggactgattctattgttatgtgttgttacag-----
 || || || || ||| | | ||||||||| ||||| |||||| |||||||| | ||| ||||||| |||||||| ||||| || ||||||||||||||||||| ||   |||   | |      | | ||  |||  | |  |||| | |     ||  | | ||||  ||||| |   |||    |      
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgtttt-cattggcttaatgtag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttat-ctttgc----attgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgt-tatgtgttgttacag
 || || || || ||| | | ||||||||| ||||| |||||| |||||||  | |||||||| || |||||||| ||||| || ||||||||||| ||||||  ||   |||| |    ||  || ||||   |   |  | |    |  ||| ||      | ||| |   || | | ||  ||  | |||
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGGCGCAAGTTGGGCGGACTCAGGGTGCTCAACTCCTACTGGGTGAACGAGgtacatttcactttactgagatctttcaaagatgattatcaaca-atgtatctgccttccattaatgacttggttttctttggtttaatgcag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G034794_T03 (Zea mays), 5'ss of exon 1
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttgg-actgattctattgttatgtgttgttacag--------
 || || || || ||| | | ||||||||||||||| |||||| | |||||| | ||| | ||||| |||||||||||||| || |||||||||||||||||||| | |  |||  |||     |   | |  |    |  | || |   || ||  | |||||| | |    |   | ||||||| |        
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgct-taattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgtt---atctttgcattgt--tgaaagtgaaacctgg----atatgaattgctgac-tggttgg-actgattctattgttatgtgttgttacag-----
 || || || || ||| | | ||||||||||||||| |||||| | |||||| | ||| | ||||| |||||||||||||| || |||||||||||||||||||  |   |   ||| |||||   ||   |  |||  |     ||  |||||     | | ||| | |||||| |  |   |   ||||  |  |      
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttgaaatcttgaattgtgccgagcttataacaagatagcatgagaattttcatcctagttagtactgatgccttatctccttgttactgaacaacag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G084757_T02 (Zea mays), 5'ss of exon 2
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgt--tgaaagtgaaacctggatatgaattgctgactggttgg-actgattctattgttatgtgttgttacag--------
 || || || || ||| | | |||||| |||||||| ||||| || |||||| | ||| | ||||| |||||||||||||| || |||||||||||||||||||  |    |||  | |   | | |   | |       | || || |   || ||| | |||||| |  |   |   | ||||||| |        
CCAGCTCAAGTTCCAGAGGAACAAGAGATCTGTTGCTGAGGAACGGGCTGGACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatacttgaattgagtcgagattataacaagatagcatgaggattttcatcctagttagtactgatgccttatctcgctcttgttactgaacaacag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G024354_T01 (Zea mays), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggata---tgaattgctga--ctggttggactgattctattgttatgtgttgttacag---------------
 || || || || ||| | | |||||||||||| || |||||| |||||||| | ||| | ||||| || |||||||| || || ||||||||||||||||||  |    || | |   |  | | |      |  | |   |   ||| | |     ||   | |  || | |  ||   ||   |  |                 
CCAGCTCAAGTTCCAGAGGAACAAGAGGTCTGTCGCTGAGGAGAGAGCTGGACGTAAGCTTGGTGGACTGAGGGTTCTTAACTCCTACTGGGTGAATGAGgtacatcggatt-gtaacatgaacactcctctttaaacatactagcttgtttatatctgtcaaattttttttctaattgcctgacatgcccatatctcctatcacag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgtt----atct-ttgca-----ttgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgttat-gtgttgttacag---
||| ||||||||||| ||||||||| | ||  |||| ||||| || |||||| ||||| ||||||| |||| ||||||||| || || ||| | |||||||| |||     || |  ||||     ||  |     || | |   |   |  | | ||| ||  |||| |   |  ||   |  | || ||| ||||    
TCAGCTGAAATTTCAACGCAGCAAGCGTTCAATTGCAGAGGAACGTGCTGGACGGAAGCTGGGTGGTCTCAAGGTTCTCAACTCTTATTGGATCAATGAGgtctgtatagaatttactgcacttatttcctacctatgtatctcagtcttcgagttctg-ctatttgggcacttgttagcatgctagttttggtacatgat

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgtt--atgtgttgttacag-----------------------------
 ||||||||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| || || | ||||||||| || |||||| | |||||||| |||  | |        || || |  |    | |   |     | ||    |||   ||   | |||||||  |     |  | |                               
CCAACTGAAATTCCAGCGCAGCAAGAGGTCAGTTGCAGAGGAACGTGCTGGGCGAAAGTTGGGAGGTCTTAAGGTTCTCAACTCGTACTGGATCAATGAGgtttgtagtgtg-attccattcaatgatatgatttgtcctatccagttgtaatgttttgctttctatattgttttacacactactgccattaatgataaaacgtttctgttgatgcag

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgtt-----atctttgcattgttgaaagtgaaacc-----tggatatgaattgctgactg-gttggactgattctattgttatgtgttgttacag--
 || || || || ||||||| |  | | |||||||| |||||||| || ||||| ||| | || ||||||||||||||||| || |||||| | ||  |||| ||||     ||||| ||  |       ||    ||     ||   |     | || | |  | |  |  | ||    | | | ||  | ||   |  
GCAGCTCAAGTTCCAGCGCAACTTGCGTTCTGTTGCGGAGGAGCGGGCAGGAAGAAAGCTTGGAGGCCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtgtgttgaaacatcttggctcttacatgggttccgcccattctgagcactggctactcatttcggttaagggtttagggtttaaggttctatttttgtg

upper sequence: GLYMA05G04870.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 3
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgttatgtgttgttacag---------------
 || || || || ||||| |    |||||||||||| |||||||| |||||| | ||| | ||||| |||||||||||||| || |||||| | ||  |||||||| |||      ||   |  | | | | | |  | |    |  | | |  |     | | |||||    |||| ||     ||               
ACAGCTCAAGTTCCAGCGTAATTTGAGGTCTGTTGCTGAGGAGCGGGCTGGACGCAAGCTTGGTGGGCTCAGGGTTCTCAACTCTTACTGGATCAACCAGgtatgtaatccgcttcttcgcgtcacttacatcagtgttt--tcttattatttttctttttcagtctatgtccatgttttccccaaggttagtgataaggca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022947|gb|BM093981.1|BM093981
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|207816719|gb|GD787098.1|GD787098
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCC
EST: gi|208255945|gb|GE055626.1|GE055626
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGGGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|298192088|gb|HO036170.1|HO036170
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGTATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|10848122|gb|BF070670.1|BF070670
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|4396093|gb|AI495090.1|AI495090
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGNGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|208107430|gb|GD903789.1|GD903789
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|213603531|gb|DB970516.1|DB970516
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|151396959|gb|EV266832.1|EV266832
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|6095254|gb|AW119921.1|AW119921
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|58023239|gb|CX709980.1|CX709980
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|20207507|gb|BQ133596.1|BQ133596
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|26045629|gb|CA783157.1|CA783157
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|298181275|gb|HO022714.1|HO022714
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|193628893|gb|FK576371.1|FK576371
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|17519400|gb|BM188442.1|BM188442
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|254347217|gb|GR856887.1|GR856887
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|19269988|gb|BM886244.1|BM886244
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|22931591|gb|BU548730.1|BU548730
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|209711012|gb|BW676409.1|BW676409
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCNATTCTGGTGGATGTTGCCCACAG
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTC-ATTCTGGTGGATGTTGCCCACAG
EST: gi|298163888|gb|HO013533.1|HO013533
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|298173489|gb|HO016825.1|HO016825
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|298190442|gb|HO032563.1|HO032563
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|193474694|gb|FK439333.1|FK439333
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCCACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACA
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACA
EST: gi|208245197|gb|GE041591.1|GE041591
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGGGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|15204431|gb|BI427199.1|BI427199
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|209711013|gb|BW676410.1|BW676410
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|254327465|gb|GR837088.1|GR837088
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|16996585|gb|BM085957.1|BM085957
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|120531327|gb|EH259460.1|EH259460
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|22927586|gb|BU544725.1|BU544725
EST:     GAAGGAAGTTGGGTGNNCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|254347218|gb|GR856888.1|GR856888
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
EST: gi|192323314|gb|FK017420.1|FK017420
EST:     GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAG                         GACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC
genomic: GAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatc ... gttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAACTGAAATTTCAGCGCAGCAAGAGGTCTGTTGCCGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTTCTCAATTCATACTGGGTGAATGAGgtatgttatctttgcattgttgaaagtgaaacctggatatgaattgctgactggttggactgattctattgttatgtgttgttacag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA