Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgtattacttttatatgtcactatatacttctcattataatttatacatatgttgtgacctttctttttctcatgtcatgtaattagcttgtgctaatatt...
Basic information
species | Glycine max |
transcript | GLYMA05G04340.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22540.3 (Arabidopsis thaliana), 5'ss of exon 3
GCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgtat-tacttttatatgtcactatatacttctcattataatttatacatatgttgtgacctttctttttctcatgtcatgtaattagcttgtgctaatatt
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------------------------GCAGCTAATCTCGA-AGTTGGTGC--ATCAGGGAAGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGgtacatagtcttaacgctcaagaattgctttgctttgaaatgttttctta-atcaggatttgtgtgtttggt-tgacat-tatttggtttctag-------
upper sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 5'ss of exon 3
GCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgtattacttttatatgtcactatatacttctcattataatttatacatatgttgtgacctttctttttctcatgtcatgtaattagcttgtgctaatatt--
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GCAGCTAATATTGAAGCTGAAGTTTCTGGAATTAATGATAGTGAATTTCAATTGACAAAGCATGAACTGTCCAGCCTAGGGCGTGGAAAATATAGTGgtatgattaatgcgcattact-tctgatcctgaatatatatccttccttttctttgtttgcttcatttattttatcattttaa-aatttgtaagcatgccccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213599834|gb|DB973892.1|DB973892EST: CCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTG AATGCAGTACTACTGAATCATCTGATGATATTGAGAAACAGGA
genomic: CCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgtattacttt ... tggttttcagAATGCAGTACTACTGAATCATCTGATGATATTGAGAAACAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCTAATATTGAACCTGAGGCCACTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGgtattacttttatatgtcactatatacttctcattataatttatacatatgttgtgacctttctttttctcatgtcatgtaattagcttgtgctaatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA