1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATGgtatgagatagtttgcataaaagcttttcaatataataactttatggcaactggctaggacctattaatcagtacgcatattgtcttaaccttctctata...
species | Glycine max |
transcript | GLYMA05G04160.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATG ATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTCEST: gi|21677977|gb|BQ630328.1|BQ630328
genomic: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATGgtatgagata ... ccgtgattagATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTC
EST: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATG ATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTCEST: gi|15813432|gb|BI785707.1|BI785707
genomic: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATGgtatgagata ... ccgtgattagATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTC
EST: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATG ATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTCEST: gi|298173390|gb|HO016726.1|HO016726
genomic: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATGgtatgagata ... ccgtgattagATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTC
EST: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATG ATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTC
genomic: GGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATGgtatgagata ... ccgtgattagATTCCAGGCATTGTATTTGCAAGAGGACCAGCTGTAGCTGTGCTGATACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGACATTTTTGACAAGGAAACAGGGAAAATGgtatgagatagtttgcataaaagcttttcaatataataactttatggcaactggctaggacctattaatcagtacgcatattgtcttaaccttctctata
- - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc