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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctcaaatttgaatgctcaattaattatagaattttcttattcaatataatttgttttctttgagaacattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag

Basic information

species Glycine max
transcript GLYMA05G03150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctcaaatttgaatgctcaattaattatagaattttcttattcaatataatttgttttctttgagaacattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag
||||||| ||||| ||||| || ||||||||||| ||||| |||||||||||  | ||||||||||||||||| || ||||| |||||||||||||| ||||                          ||  || |    | || |   | ||||| ||   |||| |||       ||||| ||  | |  |||  | | |  |||  |     ||||  |||   |
TGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGGCTATCTTCCTGTTGGATACACTTGACAAGGACATCAATTCTTTCTCCATGAGAGTGAGgt----------------------ctggtttcttcttccgtgttttgggttaatatgatgcatttttttt-----tgttgtggacatgcatgattgttctattgattcaccaca-caatggtgtttgg

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g46720.2 (Oryza sativa), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctcaaatttgaatgctcaattaattatagaattttcttattcaatataatttgttttctttgagaacattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag
| ||||| ||||| |||||||| || |||||||| |||||||| || ||  |  | ||||||||||| |||||||| ||||| |||||||||||||| ||||    |||  | |  ||   |||| |||| |  ||     ||  ||| | | | | ||||   || || ||     |||||| ||||||   || ||  |   | ||   |                
TTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGgtt---tgttgccatcttt--tgcttaatttac-atgttcattgtttagtgatttttatttagatttttaga---tgttgtga-ctggaat--ttaatcacctcaattatgt----------------

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G110233_T01 (Zea mays), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtct-caaatttgaatgctcaattaattataga-attttcttattcaatataatttgttttctttgagaacattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag--------------------------------------
||||||| ||||| || ||||| || |||||||| || ||||| || || || || ||||||||||||||||| || ||||| |||||||||||||||||||| | |   |    || |        ||||  |||| |  |  |||||||  |   ||||  |   | |||    ||| | ||  |||  ||||  | | |    || ||  |   ||| |||                                            
TGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAGCAATATTTCTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtccttgttcatgttctcatataattgtttatggttaacttcttata-agcgtaataggccgtatttatagacagtctgctctgatagaaaac-tctgataatatgaatatgcaaatattccttattatgattatttattgctttctcaataaaacattgcag

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctcaaatttgaatgctcaattaattatagaattttcttattcaatataatttgttttctttgagaacattg-tgaactggaaga--attcatttctctatttgct---ttgtcaattatgtgcag---
||||||| ||||| || ||||| ||||||||||| || || || ||||| ||  | ||||| ||||||||||| || ||||| |||||||||||||||||||  | |  ||     |   ||      ||| |   |   || |   |  ||  |||    |    ||||||| | ||   ||  |    |     ||  | |   ||||| ||   || ||||| |    | |   
TGAAGTTCAATGTGAATCGTGTTGACAACATGGTGATCCAGGCAATCTTTCTATTGGATACGCTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtc-tgttgcttgttctcctataactgtttattgtcaattttctaagaggcatcataggcagggagctttgaggatatgaatgtgccaatatgcccttggtatgattatttactgttttctcaataaaacactgcag

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G12860.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctca--aatttgaatgctcaattaattatagaattttcttattcaatataatttgttttctttgaga---acattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag
||||||| ||||||||||| || || |||||||||||||||||||| ||| | ||||| |||||||| |||||||| ||||| ||  | |||||||||||||    | ||| |    ||||  |     ||||  | | |  | ||    |  || | ||  || |||||  |      | ||| ||   | | ||                                     
TGAAGTTCAATGTTAACCGGGTGGATAACATGGTTATTCAAGCTATTTTCATGCTTGACACACTTGATAAGGATATCAATTCCTTTGCTATGAGAGTCAGgtttgttttcttattgttttgcctttcagattatgtcttgtctgttaccgt--aagagaaaatggtttctgagcagctcatattatgtttttgcag-------------------------------------

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctcaaatttgaatgctcaattaattatagaattttcttattcaatataatttgttttctttgagaacattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag
||||||| ||||||||||| || || |||||||||||||||||||||||| | ||||| || ||||| |||||||| ||||| ||  |||||||||||||||                           |  || |    |||||   ||||  ||  | ||||||| | ||||| ||||  | ||| ||   || ||     ||||                     
TGAAGTTCAATGTTAACCGAGTGGATAACATGGTTATTCAAGCTATCTTCATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAGgt---------------------------ttgttttgtgcttttccctttcag-attgtgtgttttcctcgagaaaattggtagctg-aactgtttataatgttattacag-----------------

upper sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 3
TGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAGCTATCTTCCTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtctcaaatttgaatgctcaattaattataga--attttcttattcaatataatttgttttctttgagaacattgtgaactggaagaattcatttctctatttgctttgtcaattatgtgcag
||||||| ||||| ||| | || || || ||||| ||||| || ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||||||||  | |   | | ||| |    |  |  |  |  | |   ||| |  | ||||||   |  | | || |||     | ||  || ||     ||| || |  ||                         
TGAAGTTCAATGTGAACAGAGTCGATAATATGGTCATTCAGGCCATCTTCCTTCTCGATACTCTTGATAAAGATATCAATTCCTTCTCCATGAGAGTCAGgtt-tgttattaatattcgtccacaaaccttgtctttggtgattgttatcttcaatccgacatatattatttat--tccttcggagct-----aatccactggtcctg----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208288849|gb|GE086654.1|GE086654
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTT
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTT
EST: gi|193357442|gb|FK321926.1|FK321926
EST:     CTTCTTGATACACTTGACAAGGATGTTAATTCGTTCTCCATGAGAGTCAG                         AGAGTGGTATTCATGGCACTTTCCTGAGCTGGTGAAAATTGTAAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAA
EST: gi|254320642|gb|GR827091.1|GR827091
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
EST: gi|254314031|gb|GR831660.1|GR831660
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
EST: gi|208053169|gb|GD853502.1|GD853502
EST:     CTTCTTGATACACTTGACAAGGATATTAATCCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCTATTTTTCCTGAGCTGGTGAAAATTGTAAATGAT
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGC-ATTTT-CCTGAGCTGGTGAAAATTGTAAATGAT
EST: gi|208269633|gb|GE071691.1|GE071691
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAGAATTGTAAATGATAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
EST: gi|254322077|gb|GR837491.1|GR837491
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
EST: gi|15812968|gb|BI785243.1|BI785243
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
EST: gi|151403792|gb|EV273602.1|EV273602
EST:     CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAG                         AGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA
genomic: CTTCTTGATACACTTGACAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtatgtc ... ttatgtgcagAGAGTGGTATTCTTGGCATTTTCCTGAGCTGGTGAAAATTGTAAATGATAA