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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGTGAAACTAGTGCTGGAGAATGAGCTGGGACAGGGTATTGATGATGTTTTTGAAAGGTTCGATGTCGAACCCCTTGGTTCTGCTTCAATTGCTCAGgtccatgtcaaacttctcacctgctatcttatttgtcactgccctgcccctcagtaatggttgtcatttgaattgcactagtattcttctttcttcaaca...

Basic information

species Glycine max
transcript GLYMA05G02990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 3
TGTGGTGAAACTAGTGCTGGAGAATGAGCTGGGACAGGGTATTGATGATGTTTTTGAAAGGTTCGATGTCGAACCCCTTGGTTCTGCTTCAATTGCTCAGgt--------ccatgtcaaacttctcacctgctatcttatttgtcactgccctgcccctcagtaatggttgtcatttg-aattgcactagtattcttctttcttcaaca
||   |  |||  ||||||||||| ||| |||| ||  |||||| |||  | |||||||| || ||||| || ||  ||||||||||||||||||| |||||        ||||||  ||  | |  |    ||  | |  ||   |   | |   |  || |        | ||  | || ||| | | |||   |            
TGCAATCCAACCTGTGCTGGAGAAAGAGTTGGGTCAAAGTATTGGTGAAATATTTGAAAGATTTGATGTGGATCCAATTGGTTCTGCTTCAATTGCACAGgtgcttctctccatgtggaatctttgcctccttaaataacatgaatcatgcttaagctacaatttccaacattatgagtaactgcccgaatatctctgca---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045634|gb|CA783161.1|CA783161
EST:     TTTTTGAAAGGTTCGATGTCGAACCCCTTGGTTCTGCTTCAATTGCTCAG                         GTTCATAGAGCAAGACTGAAAGGTGATACAGGTGATGTTGTTGTCAAG
genomic: TTTTTGAAAGGTTCGATGTCGAACCCCTTGGTTCTGCTTCAATTGCTCAGgtccatgtca ... tgaatattagGTTCATAGAGCAAGACTGAAAGGTGATACAGGTGATGTTGTTGTCAAG
EST: gi|19347140|gb|BM892020.1|BM892020
EST:     TTTTTGAAAGGTTCGATGTCGAACCCCTTGGTTCTGCTTCAATTGCTCAG                         GTTCATAGAGCAAGACTGAAAGGTGATACAGGTGATGTTGTTGTCAAG
genomic: TTTTTGAAAGGTTCGATGTCGAACCCCTTGGTTCTGCTTCAATTGCTCAGgtccatgtca ... tgaatattagGTTCATAGAGCAAGACTGAAAGGTGATACAGGTGATGTTGTTGTCAAG