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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCCGACTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTACAAGgtcagatactttgtcattgtcctatatgctttggtttcctttttctcaagaaaactatttacatggacctgaacatagttgtgttattcttgcgcag

Basic information

species Glycine max
transcript GLYMA05G02840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02840.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
TTTACCCCGACTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTACAAGgtcagatactttgtcattgtcctatat-gctttggttt---cctttttctcaagaaaacta------tttacatggac-ctgaacatagttgtgttattcttgcgcag----
 || |  || ||  | ||||||||  | |||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || |||||  | ||   | |  || | | || | | ||| | ||   |  || | ||  | |  ||       | || ||  || || ||| |      | ||| | |   |      
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtttgttatcctttt-ttattccatgttgatttagcttgatctattatttcttgcatgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: GLYMA05G02840.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 3
TTTACCCCGACTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTACAAGgtcagatac--tttgtca-ttgtcctat---atgctttggtttcctttttctcaagaaaactatttacatggacctgaacatagttgtgt-tattcttgcgcag
|||| | |  ||  | |||||||| || || ||||||||| | |||||  ||||||| ||||| |||||||| || ||||| ||||||||||| ||||||||  |      | ||| | |||    ||   ||  |  | | |||  ||    |    |  |   |   |     | |     |     |  | | |||     
TTTATCTCAGCTGCGAGCTGTTGTCCTGCATAGTCCTATATTGTCAGGGCTGAGAGTTATGTATCCTGTGAAGCGCACATATTGGTTTGACATCTACAAGgtttgtcgtcatctgttaattgcggcattcaatattgagttatccgcttctatatctcaggtgcctgattttttgttattcaggcgacatgcaattttgt----

upper sequence: GLYMA05G02840.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S123_154V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTACCCCGACTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTACAAGgtcagatactttgtcattgtcctatatgctttggtttcctttttctcaagaaaactatttacatgga--cctgaacatag-ttgtgttattcttgcgcag---
  ||||| | ||  | | |||||| || |||||||| || || || ||| |  |||| |||||||| |||||||| || |||||||||||||||||||||||   || ||     | | | |  |||          | |  | |       |   ||| ||| |||  |     || || || | || |   || ||||   
GCTACCCAGTCTTCGAGGTGTTGTACTTCACAGTCCAATCCTTTCCGGACTTCGAGTTATGTACCCAGTGAAACGCACGTACTGGTTTGACATTTACAAGgt---atgctgatgaactattccttattgcagcaacacgtaatgcaggtttcacaaattcacacggaatctcttccaaagcttttattttatatgagcagacc

upper sequence: GLYMA05G02840.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19908 (Selaginella moellendorffii), 5'ss of exon 3
TTTACCCCGACTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTACAAGgtcagatactttgtcattgtcctatatgctttggtttcctttttctcaagaaaactatttacatggacctgaacatagttgtgttattcttgcgcag
  | ||  | ||  ||||||| ||||| ||||| || || ||||| ||| || |||| ||||| || ||||| || || |||||||||||||| ||||||||     |||||||  || ||             ||| |  |||  | || |  | |  | |    ||       |  || | || || | ||||||
ACTGCCAAGGCTCCGGGCTGTAGTTCTTCACAGCCCGATTCTATCTGGACTGCGAGTAATGTATCCCGTGAAGCGCACGTACTGGTTTGACATCTACAAGgt-----actttgttgttttctc-----------ttttcacttttcccagcacgcaagctccgctcac-------tgctttttttgttttcgcgcag