1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCGTAAAAATTGTCCGTGGTATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGgtaagtagatttaacttaaatttgtcacgtatgctagtacatactacaatgaaaatccttgattccattgcattggttaaatgggcttattccttgcag
species | Glycine max |
transcript | GLYMA05G02740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCG TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTEST: gi|193536287|gb|FK492719.1|FK492719
genomic: GAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGgtaagtagat ... ttccttgcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
EST: ATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAAGGAAGGACAATCG TTGTGTGCAAATACGGAACTGGTTEST: gi|21994008|gb|BQ785536.1|BQ785536
genomic: ATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAA-GGA-GG-CAATCGgtaagtagat ... ttccttgcagTTGTGTGCAAATACGGAACTGGTT
EST: GAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCG TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
genomic: GAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGgtaagtagat ... ttccttgcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTAAAAATTGTCCGTGGTATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGgtaagtagatttaacttaaatttgtcacgtatgctagtacatactacaatgaaaatccttgattccattgcattggttaaatgggcttattccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG