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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAACTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctgatacaaactttttttattcctctgactttttaatggtcatatgaatgcatcacatgatgaccatcaccatgcccatttagtcctttccttaaataatatattggtccatatttatgcag

Basic information

species Glycine max
transcript GLYMA05G02710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02710.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g19304.2 (Oryza sativa), 5'ss of exon 3
CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAACTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctgatacaaacttttttta--ttcctctgactttttaatggtcatatgaatgcatcacatgatgaccatcaccatgcccatttagtcctttccttaaataatatattggtccatatttatgcag
 || || || || |||   || || ||||| ||  |||||||||||||||| ||||||||||| || ||||| ||||| |||||    |||||  ||||||| ||| |  | |     |  |  |   ||     |    | ||||||  | |||    |    |   | |  ||         |||| | || |||  ||   |    | ||   |  || |  | |||
TATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGgtaggtgtttttcttgtctactacaaactctagccaaccatgaatggttttttgag---aatggacattaattattgttcactacattaactcattttattttgtttactcttatccgttaatctttcag

upper sequence: GLYMA05G02710.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142836_T01 (Zea mays), 5'ss of exon 2
CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAACTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctgatacaaactttttttattcctctgactttttaatggtcatatgaatgcatcacatgatgaccatcaccatgcccatttagtcctttccttaaataatatattggtccatatttatgcag
 || |||||||| |||  | | || ||||| ||  |||||||||||||||| ||||||||||| || || || || |||||||| |  ||||| ||||||||             || | ||||  | ||  || || |     ||   ||   |   | || |  |  |  | | || ||    |||   |||||  ||     ||                     
TATTTACATTAATACTTCGCTGGAAACAAAAGCTCATGCTCATGAACTTGTTCCTACAATAACTTGCACCTCTTCTAATGTTGTTCCAACTATACTACAGgt-------------acctgttttgcttctgagaattatctg-agtttcatttgtattttacttatt--ctgtaatcaagctttcttaa--ctttctatatgctttag--------------------

upper sequence: GLYMA05G02710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09490.t01 (Vitis vinifera), 5'ss of exon 3
CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAACTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctgat-acaaactttttttatt-----cctctg-actttttaatggtcat--atgaat---gcatcacatgat------gaccatcacc-------atgcccatttagtcctttccttaaata--------atatattggtccatatttatgcag
  | || || ||||||  |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| || || || || ||||||||| | || || |  || ||| |||     | |||| |   ||||  | |  |  |||| |   | || |  || |        ||| | |         ||    ||    ||    |||||||         ||   ||  |     ||  |||||
TGTTTATATAAACACTTCGTTAGAGACAAAAGCATATGCTCATGAACTTGTGCCAACAATTACCTGTACTTCTTCTAATGTTGTGCAAACCATTCTGCAGgttggtattatcaccagtttctttaattataatcttctgcatcatttagggcttgtctatgagttttgtattatgtggtttcttgagccacctctcaagggagtggtttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562804|gb|BG551024.1|BG551024
EST:     TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAG                         GCATTTGCTCAAGT
genomic: TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctga ... atttatgcagGCATTTGCTCAAGT
EST: gi|151398608|gb|EV268479.1|EV268479
EST:     TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAG                         GCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC
genomic: TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctga ... atttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC
EST: gi|8283359|gb|BE020920.1|BE020920
EST:     TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAG                         GCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC
genomic: TGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtctga ... atttatgcagGCATTTGCTCAAGTTCCAGATTTGAGCATATTTTATGGACCTGATTCTTAC