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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAACTCAGTATTCGGGTGACACCGTTATTATTGTGTCGCCAGATTCTGACAACTTGACAATCCTTCAGGCAGGTTTGATAGGACTAGACCTTCGAAGgtatggttttaatcaaaagcttcaattaaggttttaattttggttactagttcagtagttctgcatcactttttttgttgctttttcttgaatttcag

Basic information

species Glycine max
transcript GLYMA05G02120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02120.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g47190.1 (Oryza sativa), 5'ss of exon 3
TTGAAACTCAGTATTCGGGTGACACCGTTATTATTGTGTCGCCAGATTCTGACAACTTGACAATCCTTCAGGCAGGTTTGATAGGACTAGACCTTCGAAGgta------------tggttttaatcaaaagcttcaattaaggttttaatttt--ggttactagttca-gtagttctgcatcact-------ttttttgttgctttttcttgaatttcag---------------------------------------------------------------------------
| || |||||||| ||||| || |||||| | ||||| || ||||||||||||||| || |||| || || || || |||||||| |||||||| || |||||            |  ||||| || |   | |     ||| |||||  |    |  | || ||  |   ||| |  ||    |       || || || |    || |   | | | |                                                                           
TAGAGACTCAGTACTCGGGGGATACCGTTGTCATTGTTTCACCAGATTCTGACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaaccagcaattcattttattccactccattttgcaagtttttatctgcaggacttctggtaaacacagtgcaacaatgttagggagtttgttagtggaaacttttctcactgctgctcatgtatactctgcactattagtgattggggggaaacatatccttatatctctatcatttatcatttctgcag

upper sequence: GLYMA05G02120.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G098973_T01 (Zea mays), 5'ss of exon 3
TTGAAACTCAGTATTCGGGTGACACCGTTATTATTGTGTCGCCAGATTCTGACAACTTGACAATCCTTCAGGCAGGTTTGATAGGACTAGACCTTCGAAGgtat--ggttttaatcaaaagcttcaattaaggttttaattttggttactagttcagtagttctgcatcactttttttgttgctttttcttga-atttcag
| || || ||||| || || || || ||  | ||||| ||||| ||||||||||||||| |||| ||||| || || ||||| || || |||||||| |||||        ||   |   | || | |  || |  |   || ||        |  |||     | ||  || |      |    |   || | | | || 
TAGAGACCCAGTACTCAGGGGAAACTGTCGTCATTGTTTCGCCGGATTCTGACAACTTGTCAATTCTTCAAGCTGGATTGATCGGGCTTGACCTTCGGAGgtactaaaacatagcaacctgattaactctagctagtgtattcggaactgcacttggtatgcaaggatttctctggcgaatagcatacattaacactaca-