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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATGATACTCCATGGGATGGAGgtgagtttgtctttttaccatggctcctattttggaaacaattttgatacatgtcaactcagttatttagccatcctgtacattgcatgcaattttaatg...

Basic information

species Glycine max
transcript GLYMA05G01270.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302663|gb|FG994901.1|FG994901
EST:     TGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|151408894|gb|EV278702.1|EV278702
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|120530431|gb|EH258564.1|EH258564
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|21887693|gb|BQ740906.1|BQ740906
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|151398226|gb|EV268104.1|EV268104
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|208204410|gb|GE007817.1|GE007817
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|26047615|gb|CA784343.1|CA784343
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|31460020|gb|CD402048.1|CD402048
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|192299657|gb|FG990010.1|FG990010
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCATGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|192326016|gb|FK016198.1|FK016198
EST:     TACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|27427583|gb|CA939103.1|CA939103
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|254349242|gb|GR860040.1|GR860040
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|4397477|gb|AI496474.1|AI496474
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|151396142|gb|EV266019.1|EV266019
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|7691194|gb|AW759326.1|AW759326
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|19054147|gb|BM732814.1|BM732814
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGATGATACTCCATGGGATGGAGgtgagtttgtctttttaccatggctcctattttggaaacaattttgatacatgtcaactcagttatttagccatcctgtacattgcatgcaattttaatg

- - - - - - - - -  GATGGA
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