Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctggacctgcaatgtagccttgtcttatgctttatttatgtggtgattaactataaataatttgtacag

Basic information

species Glycine max
transcript GLYMA04G43390.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735715|gb|GD713050.1|GD713050
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|208060289|gb|GD859963.1|GD859963
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|14012147|gb|BG727069.1|BG727069
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|18041373|gb|BM309667.1|BM309667
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|193681609|gb|FK623331.1|FK623331
EST:     CTGGATATGCTGTTATCTTTCTGCACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: CTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|193393375|gb|FK359367.1|FK359367
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|193439674|gb|FK405877.1|FK405877
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|31561978|gb|CD487816.1|CD487816
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|254326214|gb|GR840806.1|GR840806
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|193398710|gb|FK362490.1|FK362490
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|27426815|gb|CA938335.1|CA938335
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGA
EST: gi|298187350|gb|HO034499.1|HO034499
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
EST: gi|120533661|gb|EH261794.1|EH261794
EST:     GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA                         GAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA
genomic: GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctg ... atttgtacagGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAgtgagttctggacctgcaatgtagccttgtcttatgctttatttatgtggtgattaactataaataatttgtacag

- - -  CTGAAG
- - - - - -  GCTGGA
- - - - - - - - - - ATGCTG
- - - - - - - - - - - GCTGTT