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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGCCTGCATAAAATCCGGTCATCTACCGTTGTAGCTAAGTACTGTGCTAAAAAGTTATCCAAGGATTGTTGTGTTCTTGCGGTCAACAATGGGAAAgttgtgttcaagcgtgacagctcaccgccgagtgttacagagttacaaggtttctgattgttcttagttttgattgttgtgaatctcatggacctagtaggattctcagtcattgagtttgttttgcagggattgatcgtcataacag

Basic information

species Glycine max
transcript GLYMA04G42390.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42390.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 3
TCATGGCCTGCATAAAATCCGGTCATCTACCGTTGTAGCTAAGTACTGTGCTAAAAAGTTATCCAAGGATTGTTGTGTTCTTGCGGTCAACAATGGGAAAgttgtgttcaagcgtgacagctcaccgccgagtgttacagagttacaaggtttctgattgttcttagttttgattgttgtgaat------ctcatggacctagtaggattct--cagtcattgagtttgttttgcagggattgatcgtcataacag
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-------------------------------------------------GCAAAGAAACTACCAAAGGATTGTTCAGTTCTTGCTGTGAACAATGGGAAAGTTGTGTTCCAGAGAGAAGCTTCTATGAGAACTACTGTTGATTCACAAGgtgtcag----ttcttaggttggagttttgtgcatgaatagtttatacttgtagtcaaattctaatattgcttgtatacttgttgcag-------------------