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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTGCCAGCTCTAAGGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattgagtttgccccattttctttctccatcttagctttctagagacaaggagaataaagttgaaacagaaagaacaatgaaacttctaggtgtaacttccatttattacttgttttatatgataacttttttactatacatctatacag

Basic information

species Glycine max
transcript GLYMA04G42010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42010.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 3
ATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTGCCAGCTCTAAGGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattgagtttgccccattttctttctccatcttagctttctagagacaaggagaataaagttgaaacagaaagaacaatgaaacttctaggtgtaacttccatttattacttgttttatatgataacttttttactatacatctatacag
|| || |||||||||||||| ||||| || ||||||||||| ||  |||| ||||| ||||||| ||| ||||| |||||||||||||||||  | ||| || ||  |||  | |||    |     |||  || |||  || | | |||                | | | ||  |   ||||      ||||  ||||     | |  |||  ||| ||| | || |  |  || |||               
ATCGCTGATCTTGGTGGCACCGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCCTGTTCTTAGATTTGCAGATAgtaag--ttgtctctgctat-taaagattcatcaactttactcttttgag----------------ttatataggcaatgcaatc--ttgtctatttgta---ctcgtagattgattgatttgtgtgttc-cacttatacag-------------

upper sequence: GLYMA04G42010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g15360.t01 (Vitis vinifera), 5'ss of exon 3
ATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTGCCAGCTCTAAGGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattgagtttgccccattttctttctccatcttagctttctagagacaaggagaataaagttgaaacagaaagaacaatgaaacttctaggtgtaacttccatttattacttgttttatatgataacttttt--tactatacatctatacag-----
|| |||||||| ||||| |||||||| |||||||| |||||||  ||||||||||| ||||| |||||||||||||| || ||||| |||||  | ||  || |||      | || |  || || | | |    | | |    | || |   ||||   |  |  |||||   |     |||  |   ||| | | || |  |   || | ||   |  | | ||  | | || ||   |   |    ||||   |     
ATTGCAGATCTAGGTGGGACAGAGATTGATTTGAGGTTTGCCAATTCTAAGGAAGGGCGTTTATTTGTCATTGTTGCCCCAGTTCTCAGATTTGCAGACAgtaagt-----ttctgacagatcttgtatttaagaccttg---acaagtggacaggaatcttgaaatgaaatgcagttctcaagtagttttccatg-gtgaacttggttcacta---gcctcagatattcatttcttatcatagtgttgctatgatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308568|gb|CD393771.1|CD393771
EST:     GTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|15285767|gb|BI469658.1|BI469658
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGTTG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|5509839|gb|AI856397.1|AI856397
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|209716366|gb|BW657486.1|BW657486
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|151397074|gb|EV266947.1|EV266947
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|31469528|gb|CD411556.1|CD411556
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|31561437|gb|CD487275.1|CD487275
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|213604484|gb|DB983516.1|DB983516
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGAAGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|105633575|gb|DW246938.1|DW246938
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACGATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|5510308|gb|AI856750.1|AI856750
EST:     GAAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GAA-GGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA