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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTACCTATCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGgtaaggaaactctttctgctgttggactttttgattttcatcttttgtacatccacatcccaataacgcgtgaagaactatgggttgatgagtttgtgca...

Basic information

species Glycine max
transcript GLYMA04G41610.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41610.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g02560.t01 (Vitis vinifera), 5'ss of exon 3
TGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTACCTATCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGgtaaggaaactctttctgctgttggactttttgattttcatcttttgtacatccacatcccaa--taacgcgtgaagaactatgggttgatgagtttgtgca
||||||||||||| | || |||||| ||||||||||||||| | | ||  | || || |||||| |||| ||||| || || |||||||||||||||||||||||||||   ||||||| |   || | ||        |   |||  |  |     | | |   |  |  |  |  || |      || |  |    |   
TGGAAGAGGTGTTCTAGTAGAAGATTCTTGGGCAATAGCAAGGAGATATTTGTCCTCGTACTTCCTAATCGACATCCTCGCTGTTCTTCCCCTCCCACAGgtaaggaaaacttttctgcagccagaatgttcttcccatagtattttaaggtttggttgcaaggctgccaaggcataaagtgcccactgttaggccaata--