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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAAAGGGGAGCCAGCGTGAAAGAGTCATTGCTACTAAGTTTGCAGCATATCCATGGCGCCTTACACCAGGGCGGTTTGTGAATGCTTGCAGgtatttgtttgttcctatcattctatcaaatccttcctcggcttcctttcctgactcccatgacaaatacttgcttgatttattttctttgtttatgattttgaacatggatgaaataaattttcag

Basic information

species Glycine max
transcript GLYMA04G40970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40970.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0098g01180.t01 (Vitis vinifera), 5'ss of exon 2
AGCAAAAGGGGAGCCAGCGTGAAAGAGTCATTGCTACTAAGTTTGCAGCATATCCATGGCGCCTTACACCAGGGCGGTTTGTGAATGCTTGCAGgtatttgtttgttcctatc--------attctatcaaatccttcctcggcttcctttcctgactcccatgacaaatacttgcttgatttat----tttctttgtttatgatt---ttgaacatggatgaaataaattttcag--------------------------------
 |||||||  ||  |||  | | |  || ||||| || ||||||||||||||||||||||| || ||||| |||| |||||||||||| |||| ||||    ||  | ||||         |||   | | ||  |   | ||     | ||    || |  | |    |  |    |||  ||     ||  |   |  ||||     || |||||  ||   ||   |||  |                                 
GGCAAAAGCAGATACAGGATAACATTGTGATTGCAACAAAGTTTGCAGCATATCCATGGCGTCTCACACCTGGGCAGTTTGTGAATGCGTGCAAgtatgcacttccttctattgctatttaatttgcttatattttgtatgggtgaattctcacatcttcattaagttttggtcaagtgaactacaatattaatccatccatgaagcagttaaacata-atactatgtgtttctattggatcaaattcgcatgattttttttttccag