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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAAGCAATATCCAATGTTGTAACCCCGGTTGATCGCCGTACTGATGGATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatggaataactgagttgttatttattattattagttatcactggtttgtaatggtaatatgtgcaatattttattctttttagtcattcctattt...

Basic information

species Glycine max
transcript GLYMA04G40450.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7327169|gb|AW621031.1|AW621031
EST:     GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG                         GAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTA
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTA
EST: gi|6567338|gb|AW234949.1|AW234949
EST:     GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG                         GAGTTTCAACCATTGAACTTTGATATATATTATGATGACCCAAGAAGCGAG
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGA---CCCAAGAAGCGAG
EST: gi|193630612|gb|FK580903.1|FK580903
EST:     GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG                         GAGTTTCAACCATTGAACTTTGATATAT
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATAT
EST: gi|120492006|gb|EH220173.1|EH220173
EST:     GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG                         GAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTA
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTA
EST: gi|208334740|gb|GE128289.1|GE128289
EST:     GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAG                         GAGTTTCAACCATTGAACTTTGATATATAT
genomic: GATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGgttagatgga ... ttacctacagGAGTTTCAACCATTGAACTTTGATATATAT