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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGgtaatgtaatactaaaatcccctctaccagaattctcttagcatcatggttctattcatgaaacagatgagcatatatttaggatgcatagtgccccaac...

Basic information

species Glycine max
transcript GLYMA04G40210.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0067g00180.t01 (Vitis vinifera), 5'ss of exon 5
TGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTTACTGTGGCCATGGGgtaatgtaatactaaaatcccctctaccagaattctcttagcatc-atggttctattcatgaaacagatgagcatatatttaggatgcatagtgccccaac
||||||||||||  |||| || ||||| ||||||||||| || |||||||||||||| |  ||||| |||||||||||  |||| ||||||||||||| |||||  | || || ||  |     |    ||  |  ||     || |   | |  |  |     |  || |   |   || | || | | |||        
TGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAATCGCTATGTGTAACATTGGCCTCATTGCCAAAGCCAACTAGAGTATACTGTGGCCATGAGgtaaaatgattcttaatacattcattttggagattcctggaattcgacaataccctctagttttctcattattgttgtttgacgaagaaaagtattgtgg-