1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGgtacacaaatacaataataatatctaactacaaaagaaataaaaaggacatgctaatgccatgctatgttgcatgcagtgccaaaaaacctgtttaactc...
species | Glycine max |
transcript | GLYMA04G40170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAG GATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGEST: gi|41145884|gb|CK606095.1|CK606095
genomic: TGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGgtacacaaat ... gatgggtcagGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTG
EST: TGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAG GATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTGEST: gi|192325862|gb|FK018084.1|FK018084
genomic: TGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGgtacacaaat ... gatgggtcagGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTG
EST: TGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAG GATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTG
genomic: TGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGgtacacaaat ... gatgggtcagGATTCGACATTGGCCGCGATGCTGTTGAGGCCAGGGCCATTGCTGGCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTCAACACAAAATCATCTATCCTTTGAGCCCTCACGAGgtacacaaatacaataataatatctaactacaaaagaaataaaaaggacatgctaatgccatgctatgttgcatgcagtgccaaaaaacctgtttaactc
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA