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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGTCGGAGAGATAGCGAATTTTGTGGCGTACGTTTATGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTgttaggtaaaataaaacgcttatggttttattattcttttttttataatatttttctactaaattaactgttttgtgactctggaaatggttag

Basic information

species Glycine max
transcript GLYMA04G38380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 3
TGATTGTCGGAGAGATAGCGAATTTTGTGGCGTACGTTTATGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTgttaggtaaaataaaacgcttatggttttattattcttttttttataatatt----tttctactaaattaactgttttgtgactctggaaatggttag
||||||| ||||| ||||| |||||||| || || |||| |||||| ||   |||||| ||||| |||||||| ||||| |||||||||||||||| | |     | ||| ||||  | ||||||||| | || | |     ||||||  |   |   |||  | ||  | ||  ||||| |||
TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaatttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatg--tatgccaatggatag