Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag

Basic information

species Glycine max
transcript GLYMA04G38010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| ||  | ||||| ||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| |         |||| |  || || |   |  ||| | ||            | | | |   | | | || ||| ||||        || | ||| | || || ||| |   |  |  |  ||  ||  | ||   |     
GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAGgtactccatg---tgaattttagatcttctttgaatttactta-----------aatgcatagatatcgattgtgt-ttgt-----agaaaacatgccagtt-tccctgttaccaatgaaaaattcaaacatgttacag-----

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| ||| | ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    | | ||||| |     ||||   ||     || |   |    ||  | |  |||  | ||  |||| | |||   |||   ||   |  ||| |     | |                                  
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgct---acatttgaact-----tcatatcttctccgagctctca----tatcattcattg--tattcttttttttttgacactgcaaaattat--aatctcctgttaacag-------------------------------

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: AC207890.3_FGT002 (Zea mays), 5'ss of exon 2
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| ||  | ||||| || |||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||    | | ||||| |     ||||   ||   | |  | ||  ||  | |            |||  ||  || | ||| |||  ||  |   ||||    |||| ||| |  |                          
GCTCGCCGTGGTGGAGTTGACGAGCCCTTTGCATGGGAAAGCAGAGAGTTTCTAAGGAAGCTTTGTATAGGGAAGgtgct---acatttgaact-----tcatatcttctctaaact-ctcgtatcatt----------cattgtattcttcctttttttggacaa-tgcaaaattataatctgctgttacag--------------------------

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactact-tgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| || ||||| ||| | || |||||||||||||||||||||| ||| ||| ||||||| || |||||||| |||||||    ||| |  ||||  |          | | ||||||  || |||     ||| | ||||||    | || |||  | ||  ||      |   ||||| |                                       
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGgtgc----aaagtcaaaattaa----------taactcagttatta-tacactagctattgtgagtgactatattttctcatctcaagt------ttttatttgacag-------------------------------------

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| || ||||| ||| | || ||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||||| |||    || |||      || ||   | | | |  || ||  | |  |   | |  |  |||   ||  | ||    | | | || | |    ||| |||                                      
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGgtgctttg----tttaaac-----tcttta--tcacttatgtgttataagttatggaattgaaaagttttcttcatatta--acagtttaaaccttttttttttcttgagcag-------------------------------

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 3
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| ||||| ||||| || || ||||| ||||||||||| |||||||||| | | |||||||||||||| || |||||||    | | || | ||   |||  | ||||  ||  |    ||  ||     ||  |         |||   ||||  |     | |  | |  |||                                            
GCCCGTAGGGGTGGAGTTGATGAGCCGTTTGCATGGGACAGCAGAGAGTATTTAAGGAAGCTCTGCATTGGAAAGgtgccc--atagttaacat---gtt--tcggttttttttggctatataacattctcttttaagacagatgttgcatcttactcaatataattctttaaatag------------------------------------------

upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttgg-ttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag
|| |||||||||||| | || || || ||||||||||| || ||||||| | ||||||| ||||||||||| ||||||| |       | | | |   ||  ||  ||  ||  | || | ||| || |     ||||    ||  |  ||||||  | | | ||  |  || |  |||  |   ||                                 
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcct------ctcatacaacttttcttcctt--ttatggtgatcctaatattctcttttgaaccatgaatcctgtcttact-cagatgttgt-tgta--ttgattacaatag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332518|gb|GR846456.1|GR846456
EST:     CTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG                         GAAGTGACTTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT
genomic: CTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaa ... tttggaacagGAAGTGACTTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT
EST: gi|193484412|gb|FK450236.1|FK450236
EST:     CTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG                         GAAGTGACTTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT
genomic: CTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaa ... tttggaacagGAAGTGACTTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTT