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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAGgtaggattgggtgaatatatcacattcaaagttctattagcatgcaaccatggatttgcatgtcataatcctcatcttgctttttttctttcatattagt...

Basic information

species Glycine max
transcript GLYMA04G37640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37640.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33520.1 (Oryza sativa), 5'ss of exon 4
GTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAGgtaggattgggtgaatat-atcacattcaaagttctattagcatgcaaccatggatttgcatgtcataa-tcctcatcttgctttttttctttcatattagt
||| |||| || ||||||| ||||||  | |||||||| || ||||| ||||||||||||||||||||  |||| ||||||||| ||     |||  ||  | | ||| |   |||| || || | ||   |   ||  ||  ||  ||| | |  || || ||   ||   ||    ||  |
GTTGTCAGTAACCCAGAGAAGACACCGCTACATACCTTCTTCTGCAACTATGATTTGAGTGACATGCCTGCTGGAACCAAGgtatgagaaattgagaattgttatatt-acttttctttttgcct-catagacttatacgctggtggtaactgcaaatgtttctgcattgtcttggagttcct

upper sequence: GLYMA04G37640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g00570.t01 (Vitis vinifera), 5'ss of exon 4
GTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAGgtaggattgggtgaatatat--cacattcaaagttctattagcatgcaaccatggatttgc-atgtcataatcctcatcttgctttttttc-tttcatattagt
|| || ||||||||||| | ||| || || || |||||| |||| || ||||||||||||||||||||| |||||||||||||  |   ||   |||||     | |||  || |  ||| |  |||     || ||  ||  |    |||    |  ||  |   |||    ||| | | |   
GTACTTAGCAATCCAGAAAAGACGCCCATTCACACCTTTCTTTGTAACTATGATTTGAGTGACATGCCATCTGGTACCAAGgttag-caggaaaaatatgcgatatattttaaatcttatgaa-atgt--ttattgacatgagacactatatgttttttcacgaaatttcaagttttaaactcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106314|gb|BI894054.1|BI894054
EST:     ATACCNNNNNNNGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAG                         ACATTCTTGCGGCAAAAGGTCACTTTAACTGCGTCTAGATCAAAGTCTATG
genomic: ATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAGgtaggattgg ... tctaaagtagACATTCTTGCGGCAAAAGGTCACTTTAACTGCGTCTAGATCAAAGTCTATG
EST: gi|51341160|gb|CO982477.1|CO982477
EST:     ATACCNNNNNNNGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAG                         ACATTCTTGCGGCAAAAGGTCACTTTAACTGCGTCTAGATCAAAGTCTATG
genomic: ATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAGgtaggattgg ... tctaaagtagACATTCTTGCGGCAAAAGGTCACTTTAACTGCGTCTAGATCAAAGTCTATG