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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaagaattgttattaactattctgttttttttttttgttgaaaaaaatggcttgaattcgatgtgggggtgtgggggcatggagtccttgaag...

Basic information

species Glycine max
transcript GLYMA04G37620.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321367|gb|GR824684.1|GR824684
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|192329042|gb|FK019713.1|FK019713
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|31466422|gb|CD408450.1|CD408450
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|9440039|gb|BE440550.1|BE440550
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|9205392|gb|BE331616.1|BE331616
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|192334197|gb|FK026578.1|FK026578
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|15204167|gb|BI426935.1|BI426935
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|23727022|gb|BU761524.1|BU761524
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|298172946|gb|HO019930.1|HO019930
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|14125368|gb|BG789806.1|BG789806
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|10710312|gb|BF010036.1|BF010036
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|26268069|gb|CA819132.1|CA819132
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         TCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|10232663|gb|BE801551.1|BE801551
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|151410843|gb|EV280658.1|EV280658
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
EST: gi|192329717|gb|FK023291.1|FK023291
EST:     ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTG                         GCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA
genomic: ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaa ... aacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGgtacgaaaaagaattgttattaactattctgttttttttttttgttgaaaaaaatggcttgaattcgatgtgggggtgtgggggcatggagtccttgaag

- - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtg