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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggactaatgtttacatatcccaatctcacagtctttttctatcattatattatgatctagaagaacaattcttgtgtttttccttttaatgttca...

Basic information

species Glycine max
transcript GLYMA04G37560.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33450.2 (Oryza sativa), 5'ss of exon 4
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggact-----------aatgtttac-atatcccaatctca--cagtct-----ttttctatcatt----atattatgatctagaagaacaattcttgtgtttttcctttta-atgttca------------------------------------------------------------------
                                   ||||| ||||||| |||||||| ||||||| |||||||||||||||||| || |||||||||  ||||||   ||           || |||||  ||||||  ||  ||   ||  |     |||  ||||||      | || || ||| | | | |  || |||  ||||   | ||| || ||                                                                    
GCTGTACCGGCCACCTCGATGCTCTCACTGTTCTATATGTAATAACTGTGTGGAGCGTTTTGATCATCACTGCCCTTGGGTTGGGCAATGCATTGGAAGGgtaagtatcttgatgtgttggaaggtttaagatatccttattgcaattagcttgaagatttgatatcatgtgcggtgttgtggtct-gtatacctcttgttggattttctatattagatattagtagattgttagttactactttaaagttttaacaagtcagcgctaattatcaacttatctgctgcag

upper sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 3
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggactaatgtttacatatcccaatctcacagtctttttctatcattatattatgatctagaagaacaattcttgtgtttttccttttaatgttca----
                                   | ||| ||||||| |||||||| |||||||  ||||||||||||||||| || ||||| |||||||||||    | |   | || |     | | |  || | || ||  |  ||   ||||   | ||       |     |    || ||     | || |||    
GCTGTACAGACCACCTCGATGCTCACACTGTTCTATCTGTAATAACTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGGTTGGGCAGTGCATAGGATTGgtaagt--ttgagaataacttgaat-agtttagcattgttgttgcaatat-gcattacagtttaatcttgtatccagtagtgttatcagaagattgctcagcgg

upper sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G868588_T01 (Zea mays), 5'ss of exon 3
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggactaatgtttacatatcccaatctcacagtctttttctatcattatattatgatctagaagaacaattcttgtgtttttccttttaatgttca----
                                   | ||| ||||||| |||||||| ||||| |  ||||||||||||||||| || ||||| |||||||||||    |   |  ||| |     | | ||||||| || ||  |  ||   ||||     || |     |     |    ||  |     |    |||    
GCTGTACAGACCACCTCGATGCTCACACTGCTCTATCTGTAATAACTGTGTGGAGCGCTTTGACCACCACTGCCCTTGGGTTGGCCAATGCATAGGATTGgtaag---tttgggaataccttgaatagtttcacagtgttgttgcaatat-gcattacagattaaacttgtatccagtagtgttaacagaagagcactcatcag

upper sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggactaatgtttacatatcccaatctcacagtcttttt--ctatcattatattatgatctagaagaacaat-tcttgtgtttttccttttaatgttca
                                   | ||  | |||||||||||||| ||||| | ||||||||| |||||||| || ||||| ||  | |||||    | |  |   ||  |   | ||  | || || | |  || |   ||||  ||  |     |  ||  | | ||   | |  |       |||   
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt---

upper sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggac-taatgtttacatatcccaatctcacagtctttttctatcattatattatgatctagaagaacaattcttgtgtttttccttttaatgttca-
                                   | ||  | |||||||| |||   |||||||  ||||| |||||| ||||||| |||||||||||||||| |||  |  | ||| |  |||  || |  |      ||   |||   || |  ||  || |||  ||| |    |   ||     |||| || | || 
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaaaaccaattacaattgcatatacctagacgat--tcaagagtaactaacagttatttgggggttttgat-tgcag

upper sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g00800.t01 (Vitis vinifera), 5'ss of exon 3
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggactaatgtttacatatcccaatctcacagtctttttctatcattatattatgatctagaagaacaattcttgtgtttttccttttaatgttca--
                                   ||||  |||| || ||||| |||||||| | ||||||||||||||||||||| || |||||| |||||| | ||     ||||  | |  ||  |   |  |||   | ||   | ||   ||   | |  |   || |    |    |    || |  | || |  
GCTTTATAGACCTCCTCGCTGTTCACACTGTTCAATATGCAATAATTGTGTGGAACGATTTGACCATCACTGCCCTTGGGTTGGTCAATGTATTGGACTGgtaatgaacattcttttaactgtatca--catgctttctaaatgtaaattaatgccattgacaaatactgcattatgggaacctagatttgttgtctttatt