Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtctttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacag

Basic information

species Glycine max
transcript GLYMA04G37370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G171622_T01 (Zea mays), 5'ss of exon 2
AACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtctttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacag
||| ||  | || ||||| ||  |||||||  | || || ||||| ||  |  |||| ||||| || || |||||||||||||| |||||||| ||||||||  |   |    |  |  ||| |   ||||  |  | |||    |    ||   | ||  | |   |  |||     |  | ||    | |  |  |                        
AACCGTGCACGAGGCTTGTCGGAGGATGGCGTCACGCAGGGTTGACGCCGTGCTGCTGACTGACTCCAACGCTTTGCTCTGTGGGATCCTCACCGACAAGgtgagggga----tgttccttcgctttttttttcgtgtcagtgccgcc--ttagatgttcccatttctcactgtatgctgtattttgggaacgctggtcag---------------------

upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50530.1 (Arabidopsis thaliana), 5'ss of exon 3
AACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtctttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacag
|||| | | ||||||||| ||  | |||||||| ||| | ||||||||  ||||||| |||||||||||||| || || ||||| ||||| ||||| | |||||       || ||||||  | | |     |  |  |  ||   ||| | || | ||  | ||  ||| |    || |  |||   |   ||| | |                       
AACTTTATTTGAAGCTTGTCGAAGAATGGCTGCTCGTCGTGTTGATGCGTTATTGCTGACTGATTCTAATGCATTACTTTGTGGGATCCTAACAGATAGGgtat-------acatgttttcatgaac-----aggattctaaatgcaaactggacttttcacttatgtttttttttttatctcttttgttttttttaag-----------------------

upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
AACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaatacttgtttttctcaccttttaacaagacagaaaagaaagttgagtc--tttgcgtagatttctgcggttttaacttacatagctttcatgttctattttgtggttaaatacag
|| | | |||||||||||||| || |||||||| ||||||||||||||  ||||| |||||||||| ||||| || || ||||||||||| ||||||||||| || |    | ||  |  |   |  |  |  |||| || ||||    |     |   ||| | | ||||| |  || |||| |||   |  |       |||  |||||||| | ||     
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttg-aattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggcttta-cttgtttcacaaaaccattcccttttgtggctgaag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000401|gb|BI321215.1|BI321215
EST:     TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAG                         GATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA
genomic: TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaa ... ttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA
EST: gi|11412897|gb|BF424908.1|BF424908
EST:     TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAG                         GATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA
genomic: TATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtatgcccaa ... ttaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCA