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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttcttttgcatatatatatatatatatatatatattcagcattcaaatgtca...

Basic information

species Glycine max
transcript GLYMA04G36610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G170291_T01 (Zea mays), 5'ss of exon 3
GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttcttttgcatatatatatatatatatatatatattcagcattcaaatgtca
|| |||||||||||| |||||||||| ||||| ||||||||  |  |  | || |||   ||  |||| || |  ||   ||||||  | |||| |  | ||||              |  |  |||  |   | ||     ||   | | ||||  ||    || ||     |  | | | ||    |||  | | | |
GTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACATgtatgtttggagatgatttcatattatcctagctctgtacacaattttctattttctatgctaatgtagcagcaattctgttttgcatattatagtttta

upper sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G170291_T03 (Zea mays), 5'ss of exon 3
---------------------------------------------GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttcttttgcatatatatatatatatatatatatattcagcattcaaatgtca
                                             || |||||||||||| |||||||||| ||||| ||||||||  |  |  | || |||   ||  |||| || |  ||   ||||||  | |||| |  | ||||   | || |      |||| |||| |  |                                                                   
GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGggacagctatgtttataaagaaaaagtttgagcctaagaaggtgtctttcaacttggatagaacatgtat---gtttggagatgatttcatattatcctagct---------------------------------------------------------------

upper sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G48425.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttcttttgcatat-----atatatatatatatatatatattcagcattcaaatgtca-------------------------------------------------------------------------------------------------
|||||||||||||| || || || |||||||||||||||||  |  | ||||||||||| ||||||||   ||  |||   || ||  | || |||||||||||     |||  || ||| |    |  |  ||||  ||| | | |  ||| ||||| |      || |  |   || | | | |  || |  ||   |||                                                                                                    
GTTTGGTGGTCTCTCGCGGACTCGAAGTATGCAGGGACAGCTTTGTTAGTGAAAAAATGTTTCAAGCCTCGAAAAGTTTACTTTAACTTGGACAAATTAGgtatt----tttatagccttgttgcttgttccttat--catcacataaatctcttgcacactagcaatttgaagccatgtttcttttatctgtcttgttatggttctgccatttccttgatctcaaagttgatgtacttgggagaaatatatcatagctagatcattgatgactaacttatatacttgtcgctctcatgcag

upper sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09970.t01 (Vitis vinifera), 5'ss of exon 3
GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttctt--ttgcatatatatatatatatatatata--tattcagcattcaaatgtca
||||||||||||||||||||||| || ||||||||||| ||| |  | || || || || ||  | |||||||  ||   ||||  | ||||| ||  ||||||   |      ||  | ||  | |||| |||||   || ||  |||||||  ||  ||  ||   ||  | | |  ||   ||   || | | || ||   
GTTTGGTGGTCTCTTGCAGATTCCAAATATGCAGGGACTGCATTGTTTGTTAAGAAGTGTTTTCAACCAAAAAAGGTCTCTTTCTCTATTGATCAAAAAGgtattatgg---ataggatctttttgttgt-tttatcatatgaagaatttcttactttgatcaattgttaattcttttcatggttaagtagaagttaattgcac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207765988|gb|GD735517.1|GD735517
EST:     GAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAG                         CTTCAAAGCATGAACCAGATGGTCGAGTAATCCTAGTTGAATTTGAAACAC
genomic: GAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagct ... ttgttgttagCTTCAAAGCATGAACCAGATGGTCGAGTAATCCTAGTTGAATTTGAAACAC
EST: gi|193490821|gb|FK455946.1|FK455946
EST:     GAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAG                         CTTCAAAGCATGAACCAGATGGTCGAGTAATCCTAGTTGAATTTGAAACAC
genomic: GAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagct ... ttgttgttagCTTCAAAGCATGAACCAGATGGTCGAGTAATCCTAGTTGAATTTGAAACAC
EST: gi|208283899|gb|GE089011.1|GE089011
EST:     GAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAG                         CTTCAAAGCATGAACCAGATGGTCGAGTA
genomic: GAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagct ... ttgttgttagCTTCAAAGCATGAACCAGATGGTCGAGTA