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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaattttttatttcctgtttgcttgatgtcatttgatttgaaaattatgtaagtggtgtgtatctgaacttagttccattttattgttttgcag

Basic information

species Glycine max
transcript GLYMA04G36460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36460.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaattttttatttcctgtttgcttgatgtcatttgatttgaaaattat-gtaagtggtgtgtatctgaacttagttcca---ttttattgttttgcag----------
 || |  || ||  | ||||||||  | |||||||||||||| |||||  ||||||| ||||| |||||||| || ||||||||||||||||| |||||||||   | |  | |||  |      ||||| |   ||||| |   | || | | | |  |    | |||  | | |    ||   ||   | | | | ||           
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtttgttatccttttttattccatgttgatttagcttgatctattatttcttgcatgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: GLYMA04G36460.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 3
TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaattttttatttcctgtttgcttgatgtcat-ttgatttgaaaattatgtaagtggtgtgtatctgaacttagttccattttattgttttgcag------
|||| | |  ||  | |||||||| || || ||||||||| | |||||||||||||| ||||| |||||||| || ||||| ||||||||||| || ||||||    |  | || |  |  ||||   ||   || |||| ||      | | ||  |     ||  ||||  ||  |   |||     |   ||||       
TTTATCTCAGCTGCGAGCTGTTGTCCTGCATAGTCCTATATTGTCAGGGCTGAGAGTTATGTATCCTGTGAAGCGCACATATTGGTTTGACATCTACAAGgtttg--tcgtcatctgttaattgcggcattcaatattgagttatccgct-tctatatctcaggtgcctgattttt-tgttattcaggcgacatgcaattttgt

upper sequence: GLYMA04G36460.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S123_154V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTACCCCGTCTAAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGGCTGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgt---taaattttttatttcctgttt--gcttgatgtcattt-gatttgaaaattatgtaagtggtgtgtatctgaacttagttccattttattgttttgcag---
  ||||| ||||  | | |||||| || |||||||| || || || || ||  |||| |||||||| |||||||| || ||||||||||||||||| |||||      ||    |||| | | ||   ||   | || ||   | ||| | || |    | |   | | |  |  | |||      |||||||   |  ||||   
GCTACCCAGTCTTCGAGGTGTTGTACTTCACAGTCCAATCCTTTCCGGACTTCGAGTTATGTACCCAGTGAAACGCACGTACTGGTTTGACATTTACAAGgtatgctgatgaactattccttattgcagcaacacgtaatgcaggtttcacaaattcacacggaatctcttccaaagctt----ttattttata--tgagcagacc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321447|gb|GR824764.1|GR824764
EST:     TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAG                         AACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaatttt ... tgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
EST: gi|17998797|gb|BI273649.1|BI273649
EST:     ACCCTGTGAAACGGACATACTGGTTTGACATTTATAAG                         AACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: ACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgttaaatttt ... tgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
EST: gi|193641366|gb|FK593200.1|FK593200
EST:     CTGGTTTGACATTTATAAG                         AACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: CTGGTTTGACATTTATAAGgttaaatttt ... tgttttgcagAACGTTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT