1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaaagttttttgtgaaattatcaatgttacctgcattgataattaaatatgctgaaaactggaaggggacaggattatcatgggctatgctca...
species | Glycine max |
transcript | GLYMA04G36420.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAG AGTTTGGACGGAAGGCCAATTAGGGT-AGTGTTGCCGAGGACAGGCCAAGGEST: gi|18848478|gb|BM567697.1|BM567697
genomic: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaa ... gttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGG
EST: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAG AGTTTGGACGGAAGGGCA-TTANGGGTGAGTGTTGCCGAGGAC-GGCCCAAEST: gi|23728471|gb|BU762290.1|BU762290
genomic: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaa ... gttatttcagAGTTTGGACGGAAGGCCAATTA-GGGTGAGTGTTGCCGAGGACAGGCC-AA
EST: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAG AGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGG
genomic: TGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaa ... gttatttcagAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGgtattactaaagttttttgtgaaattatcaatgttacctgcattgataattaaatatgctgaaaactggaaggggacaggattatcatgggctatgctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT