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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAGGCAGCCATGATAGAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtattttgacctgaaacttttcttacatgttatatatgccagtatgacataccatatttgattccattgcattggttaaatgggtttattccttgcag

Basic information

species Glycine max
transcript GLYMA04G36360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 3
CCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAGGCAGCCATGATAGAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtattttgacctgaaacttttcttacatgttat--atatgccagtatgacataccatattt---gattccatt--gcattggttaaatgggtttattccttgcag
|  ||||||||||||||||  | ||||| || || ||||| || ||||| ||||||||  |  ||||||||||||| ||||| || |||||| |||||||||||||| | |    |||   |||  | |    | |   || ||      | |   |   | ||    |||||  ||  |||  ||||||||   | ||||||||||||
CAGTAAAAATTGTCCGTGGTGTGAAGAAATACCGTGAGGCTGCTATGATTGAAATTGAAATGCTGCAACAGCTTGGTAAACATGACAAAGGTGGCAATCGgtaagtactgtctgttgactttttcttcatgcatcactaatctgatgaagtcaagcatagttttccaagattcttttttgcaaaggttaaatcattgtattccttgcag

upper sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 4
CCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAGGCAGCCATGATAGAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtatttt---gacctgaaacttttcttacatgttatatatgccagtatgacataccatatttgattccattgcattggttaaatgggtttattccttgcag
|| | |||||||||||||| || ||||||||||| ||||| |||||||| |||||||| || || ||||||||||  ||||| || || ||| ||||||||| ||| |||    |   ||  |  |   | || ||  |    || || | | | |  |  |  |        |  || |||||||||| |||||||| ||||||
CCGTCAAAATTGTCCGTGGTATTAAGAAGTATCGTGAGGCTGCCATGATTGAAATTGAAGTCTTACAACAGCTTGCTAAACATGACAAGGGTGGCAATCGgtgagtgtttactagtgttgttaactccttaacctgccactgttggcactcttataagcttttctaagcattttgtcaatggttaaatgagtttattctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285557|gb|BI469448.1|BI469448
EST:     GAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCG                         TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
genomic: GAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtattt ... ttccttgcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
EST: gi|209720934|gb|BW682413.1|BW682413
EST:     GAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCG                         TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTA
genomic: GAAATTGAGGTATTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtattt ... ttccttgcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTA