1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatgagacatggtcgttcttgttttaatttcttgtcgaagatgaatgtattagaagagagaattgttaatgttttcctgatttcatagtggtggtttccccccttttctccttgatttttaattcttctatctgttaatatctgcag
species | Glycine max |
transcript | GLYMA04G34820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAATEST: gi|6913100|gb|AW394630.1|AW394630
genomic: CCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: ATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAATEST: gi|193686617|gb|FK626052.1|FK626052
genomic: ATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: CCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAATEST: gi|23064178|gb|BU578951.1|BU578951
genomic: CCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: ATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAATEST: gi|17400409|gb|BM177191.1|BM177191
genomic: ATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
EST: ATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG GAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
genomic: ATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatg ... atatctgcagGAGTCATCTGTTTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGgtgagaaatgagacatggtcgttcttgttttaatttcttgtcgaagatgaatgtattagaagagagaattgttaatgttttcctgatttcatagtggtggtttccccccttttctccttgatttttaattcttctatctgttaatatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG