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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGGTTTTGAAGCGGAATTACGGGCCGGAGGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgtaaggttttgtgtttcttttgttgttctggatgagtttggttgtgtttagatttgatttgaagttgaggttttggtgtggtttttggatgttgcag

Basic information

species Glycine max
transcript GLYMA04G34440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G18890.1 (Arabidopsis thaliana), 5'ss of exon 2
CCAGAGGTTTTGAAGCGGAATTACGGGCCGGAGGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgtaaggttttgtgtttcttttgttgttctggatga-gtttggttgtgtttagat-ttgatttgaagttgaggttttggtgtggtttttggatgttgcag
||||| || |||||| |  |||| || || | |||||||||||||||||| || || ||| | ||||| ||| | ||||||||||||||||||||||| ||| || || |    |  |||  || || | |  |  || |  ||||      || |||||| ||      | |     |||||||| |       |   
CCAGAAGTGTTGAAGAGAGATTATGGACCAGGGGTTGATGTGTGGAGTGCCGGAGTTATTATCTATATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGgttagcttct----tcttttaattattttagcagctgtgtaattgttcacctatgttgattagataaaccgataagattgtggtttctattgacag---

upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G74740.1 (Arabidopsis thaliana), 5'ss of exon 2
CCAGAGGTTTTGAAGCGGAATTACGGGCCGGAGGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgt-----aaggttttgtgtttcttttgttgttctggatga-gtttggttgtgtttagatttgatttgaagttgaggttttggtgtggtttttggatgttgcag
||||| || |||||| | ||||| || || ||||||||||||||||||||||| || || || || || ||| | |||||||||||||||||||||||||||     || | ||||  | |  ||||  ||| |  |||  | |||   ||   |   |  ||||  | |||  | ||   |                     
CCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTTGATGTGTGGAGTGCTGGAGTTATCCTCTACATCTTGCTTTGTGGTGTTCCTCCGTTTTGGGCAGgttaaagaaagatttgattcttgtttgaagttgtatatgctgattgagagtaactgagt--gattcaaggttttgattgcag---------------------

upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g05520.t01 (Vitis vinifera), 5'ss of exon 2
CCAGAGGTTTTGAAGCGGAATTACGGGCCGGAGGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgtaaggttttgtgtttcttttgttgttctggatgagtttggttgtgtttagatttgatt-tgaagttgaggttttggtgtggtttttggatgttgcag
|| |||||||||||||| ||||| ||||| || || ||| | ||||||||||| |||||||||||||||||| | ||||| |||||||| |||||||||||||    |||||| |||||   |||   ||  |  || || |  |  ||||||| |||| ||||||||   ||    | | ||||     | ||| ||
CCTGAGGTTTTGAAGCGAAATTATGGGCCTGAAGTGGATATATGGAGTGCTGGAGTGATTCTTTATATTTTGCTATGTGGAGTTCCTCCATTTTGGGCAGgta---ctttgtggttcttgaattg---tgagtatgtctg-taattgttagattcgattgtgaagttgt--ttgcttttttgtttgctctttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193596112|gb|FK551827.1|FK551827
EST:     T-GGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAG                         AGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCA
genomic: TGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgtaaggtttt ... gatgttgcagAGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCA
EST: gi|193613726|gb|FK564190.1|FK564190
EST:     TGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAG                         AGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCA
genomic: TGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgtaaggtttt ... gatgttgcagAGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCA
EST: gi|193366857|gb|FK331543.1|FK331543
EST:     TGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAG                         AGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCA
genomic: TGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGgtaaggtttt ... gatgttgcagAGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCA