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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATGATACTCCATGGGATGGAGgtgagtggatttctttaccgaagatcttactagaaaacaattttgaaatgtttgtcaagtgtcaggttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcag

Basic information

species Glycine max
transcript GLYMA04G34170.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057599|gb|CA800513.1|CA800513
EST:     ACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: ACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|298176667|gb|HO026788.1|HO026788
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATTCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|13311815|gb|BG405466.1|BG405466
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|21675821|gb|BQ628172.1|BQ628172
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|8826329|gb|BE210059.1|BE210059
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|10710248|gb|BF009972.1|BF009972
EST:     TCCTGATGATACTTCATGGGATGGAC                         GCACGTTCAAG
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAG
EST: gi|19937736|gb|BQ081401.1|BQ081401
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|9258746|gb|BE346893.1|BE346893
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|19937295|gb|BQ081233.1|BQ081233
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|10709694|gb|BF009418.1|BF009418
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|193335969|gb|FK300669.1|FK300669
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAAATAAAACC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAA-TAAA-CC
EST: gi|4313968|gb|AI461087.1|AI461087
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|193336100|gb|FK301500.1|FK301500
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|151406462|gb|EV276277.1|EV276277
EST:     TCCTGATGATACCCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|254315330|gb|GR825139.1|GR825139
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|15286715|gb|BI470606.1|BI470606
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|7284147|gb|AW596745.1|AW596745
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|27424249|gb|CA935769.1|CA935769
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|9566017|gb|BE475588.1|BE475588
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|254315329|gb|GR825138.1|GR825138
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|151409661|gb|EV279469.1|EV279469
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|193669561|gb|FK614065.1|FK614065
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|192297673|gb|FG989937.1|FG989937
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|254330304|gb|GR841569.1|GR841569
EST:     TCATATTTGGTCCTGAGGATACTCCATGGGATGGAGG                         GCACGTTCAAAGTTGACTCTCCCAGTTTACTGAGGATTATCCAAAATAAA
genomic: TCATATTTGGTCCTGATGATACTCCATGGGATGGA-Ggtgagtggat ... agttattcagGCACGTTC-AAGTTGACTCT-CCAGTTTACTGAGGATTATCC-AAATAAA
EST: gi|14990785|gb|BI316458.1|BI316458
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|23733374|gb|BU764884.1|BU764884
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|213603132|gb|DB960423.1|DB960423
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
EST: gi|6847744|gb|AW350034.1|AW350034
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtggat ... agttattcagGCACGTTCAAGTTGACTCTCCAGTTTACTGAGGATTATCCAAATAAACCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGATGATACTCCATGGGATGGAGgtgagtggatttctttaccgaagatcttactagaaaacaattttgaaatgtttgtcaagtgtcaggttctttttccatcttgtgtgttacataactgtgtgtcatattttgagttattcag

- - - - - - - - -  GATGGA