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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAAGTCTCCTGTTGATGACCAGCAATGGCTCACTTATTGGGTTCTCTACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgcctttacccttgaatctctttatggtctttcttgtgtgatttacctgatttgagtgctcaatatatttgatgagaaacctgcgattttgac...

Basic information

species Glycine max
transcript GLYMA04G33880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G33880.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g12220.1 (Oryza sativa), 5'ss of exon 3
AGAGCAAGTCTCCTGTTGATGACCAGCAATGGCTCACTTATTGGGTTCTCTACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgcctttacccttgaatctctttatggtctttcttgtgtgatttacctgatttgagtgctcaatatatttgatgagaaacctgcgattttgac----
| |  || |||||||||||||| ||||||||||||||||| ||||| || ||||| || |||||  | ||||| |||||||||||   ||| |||||||||||||   | |  |   | ||  ||     ||  | ||| |||| | | | |  |  |||   |   || |  ||||      |||  | |   |||  |    
AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGgtaat---gaccattttcctgggtcaggagatt-ttttttttgtcttactcatttccttttgtttagcatttgatttccctcaaaaagttcagatttagcaaca

upper sequence: GLYMA04G33880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g05990.t01 (Vitis vinifera), 5'ss of exon 3
AGAGCAAGTCTCCTGTTGATGACCAGCAATGGCTCACTTATTGGGTTCTCTACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgcctttacccttgaatctctt-----tatggtctttcttgtgtgatttacctgatttgagtgctcaatatatttgatgagaaacctgcgattttgac
||| |||||| ||||||||||| |||||||||||||| || |||||| | || ||  ||||||| ||||| || || || ||||| ||||| |||||||||||||  |   ||||   || |  || |      | ||||    ||  | |  | | | ||| | ||||      | |  |   |    || |    ||      
AGACCAAGTCCCCTGTTGATGATCAGCAATGGCTCACATACTGGGTTTTGTATTCTATGATCACACTCTTCGAGCTCACCTTTGCTAAAGTCATTGAATGgtaatcgtat-tttatgtttaacactttccccaatgtggttgggctcttttcttctccttgagtggagtatct--tttcctcattcttgaatcaataatggaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812537|gb|BI784812.1|BI784812
EST:     TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG                         GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: gi|298182365|gb|HO026540.1|HO026540
EST:     TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG                         GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: gi|298190156|gb|HO032277.1|HO032277
EST:     TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG                         GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: gi|298176531|gb|HO023118.1|HO023118
EST:     TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG                         GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
EST: gi|298181555|gb|HO025730.1|HO025730
EST:     TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATG                         GATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT
genomic: TACTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTTATTGAATGgtaattttgc ... tattttacagGATTCCCATCTGGCCATATGCAAAGCTGATCCTTACCAGCTGGTTGGTCAT