Sequence
atgc intronic sequence ATGC exonic sequenceCTTGCTAAGGAACTTGTGAGATCTAGGAAAACTGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGgtaggtttttccatgttttgttagccttaacttaattttgacttatagcaaataaggattgtctaaattagttatttgtgtttagtaccaggttcttgat...
Basic information
species | Glycine max |
transcript | GLYMA04G21900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G21900.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165195_T01 (Zea mays), 5'ss of exon 3
CTTGCTAAGGAACTTGTGAGATCTAGGAAAACTGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGgta-ggtttttccatgttttgttagccttaacttaat-tttgac-ttatagcaaataaggattgtctaaattagttatttgtgtttagtaccaggttcttgat
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CTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttttttatgatttttttttgttggtttggtgtctgacgttgtccaagagaatgtccttttaatttctggaagagtgattc-tgttagttaatat--
upper sequence: GLYMA04G21900.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165195_T02 (Zea mays), 5'ss of exon 3
CTTGCTAAGGAACTTGTGAGATCTAGGAAAACTGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGgta-ggtttttccatgttttgttagccttaacttaat-tttgac-ttatagcaaataaggattgtctaaattagttatttgtgtttagtaccaggttcttgat
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---------GAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttttttatgatttttttttgttggtttggtgtctgacgttgtccaagagaatgtccttttaatttctggaagagtgattc-tgttagttaatat--
upper sequence: GLYMA04G21900.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g00540.t01 (Vitis vinifera), 5'ss of exon 4
CTTGCTAAGGAACTTGTGAGATCTAGGAAAACTGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGgtaggtt----tttccatgttttgttagccttaacttaattttgacttatagcaaataaggattgtctaaattagttatttgt-gtttagtaccaggttcttgat
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CTTGCTATGGAAATTGTGAGATCTAGAAGAACAGTGAACCGTCTTCATGAAAACAAGGCTCAATTGAATTCTATATCAATGCACCTTGGGGAAAGTGTTGgtaagataacatatctaaacatgtgtatcctgttgcacatgttactatctaaaactgcaacttcctctaaaatacatccctgcagagcagtgcctgttgt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151411105|gb|EV280916.1|EV280916EST: AAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTG CAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAAC
genomic: AAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGgtaggttttt ... gtttttgcagCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGCTAAGGAACTTGTGAGATCTAGGAAAACTGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGgtaggtttttccatgttttgttagccttaacttaattttgacttatagcaaataaggattgtctaaattagttatttgtgtttagtaccaggttcttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA