1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAGCAAGCAAGCCTTGATATCATTGTCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGgtaagttattacaatcaatgtgtgcctttttttaacttgttagagtaatattgtttctcatatttctgctttattttataaaaaaatatttgttcatacttgtttttatgatgtggtttatggcatttctagcagcttcagttgctatagtgaattaatgacagtaactctattaaattgtag
species | Glycine max |
transcript | GLYMA04G16670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATAGGCTCCAGGAATTAGG ATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGGEST: gi|20812255|gb|BQ296725.1|BQ296725
genomic: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGgtaagttatt ... taaattgtagATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGG
EST: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGG ATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGGEST: gi|151410033|gb|EV279841.1|EV279841
genomic: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGgtaagttatt ... taaattgtagATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGG
EST: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGG ATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGGEST: gi|20812245|gb|BQ296723.1|BQ296723
genomic: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGgtaagttatt ... taaattgtagATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGG
EST: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGG ATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGGEST: gi|193366619|gb|FK331949.1|FK331949
genomic: TCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGgtaagttatt ... taaattgtagATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGG
EST: AATGGGCTCCAGGAATTAGG ATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGG
genomic: AATGGGCTCCAGGAATTAGGgtaagttatt ... taaattgtagATATACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCAAGCAAGCCTTGATATCATTGTCAGACAAGAAGGATCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGgtaagttattacaatcaatgtgtgcctttttttaacttgttagagtaatattgtttctcatatttctgctttattttataaaaaaatatttgttcatacttgtttttatgatgtggtttatggcatttctagcagcttcagttgctatagtgaattaatgacagtaactctattaaattgtag
- - - - - - - - - - - - - - - - AAGAAG