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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatgtaatgctctcttttgatttagtgtccagattttcagttagatgtttttcttctcatgttgttgctttgctgatctgaccctgaaacttctgcag

Basic information

species Glycine max
transcript GLYMA04G13880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 2
CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatg----taatgctctcttttgatttagtgtccag-attttcagttagatgtttttcttctcatgttgttgctttgctgatctgaccctgaaacttctgcag
 ||   ||| | ||| || ||| | ||| |||| || ||||||||||| ||||||||||| |||||||| ||||||||   |||  | ||||| ||| | ||||     |  | ||||  | |  ||||||   ||  ||| ||||| | |  ||| |||     | ||||   | | || ||  |||                
TAATCTTGCCAGAGGTAAAAGATTGGCACTGTTCCTTGATTATGATGGAACTCTTTCACCGATTGTGGACAATCCTGAAAATGCAGTAATGTCTGACGAGgtattctttttctcctcttatgttctttagtcctcattattatcagtgaaa-atttatctggcagttttgtaaatattct-attcgacag--------------

upper sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G178546_T02 (Zea mays), 5'ss of exon 3
CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatgtaatgc-----tctcttttgatttagt-gtccagattttcagttagatgtttttcttctcatgttgttgctttgctgatctgaccctgaaacttctgcag
  |   |||     | || ||  | ||||||||||| || ||||| || || |||||||| |||||||| ||||||||   ||| || ||||| ||  | ||||||  | |     ||  |||  | ||||  ||||||   | || ||  |  |   | |    |  ||||   ||  | |||  |   ||| |          
TGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgttttccctaagtccttttaaaattagcagtccag---tgcaatttcagttcgctttctaaacattgta--ttcacagatgcg-tgctgcag---------

upper sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G178546_T01 (Zea mays), 5'ss of exon 3
CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatgtaatgctctcttttgatttagtgtccagattttcagttagatgtt-tttcttctcatgttgttgctttgctgatctgaccctgaaacttctgcag
  |   |||     | || ||  | ||||||||||| || ||||| || || |||||||| |||||||| ||||||||   ||| || ||||| ||  | ||||||     | ||  |   |    | |  | |||  ||||    ||   ||||   ||   || |     |  |  ||  |                 
TGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgt-----tttccctaagtcc--ttttaaaattagcagtccagtgcaatttcagttcgctttctaaacattgtattcacag----------------

upper sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G51460.2 (Arabidopsis thaliana), 5'ss of exon 2
CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatgtaatgctctcttttgatttagtgtccagattttcagttagat--gtttttcttctcatgttgttgctttgctgatctgaccctgaaacttctgcag------
 |  | ||||||||| || ||||||||||||||||| |||||||| ||||| ||||| || ||||| ||  | ||||| | ||| | |||||||     |||| ||  |   || |  |   |||   | ||  |  | |   ||||    |||     ||||  |  |  |    | || ||   |      || | ||       
GAGTTTTGCAAAAGGCAAAAGAATAGCATTGTTTCTTGATTATGACGGGACACTTTCGCCTATTGTTGAGGAACCTGATTGTGCATACATGTCAAGTGCTgtaagtttttaactttcctctattaa-attcaattgctaaaacagatcaaatttgtgattcatcctcataatgaatt-atatggttcacgcctttttacatgtttag

upper sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 2
CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatgtaa--tgctctctt---ttgatttagtgtccagattttcagttagatgtttttcttctc------atgttgttgctttgctgatctgaccctgaaacttctgcag----------
 |||| ||| || || || |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||||   || |||||||| ||   |||  | |   || |  |||   || || ||   |  ||| | | |      | ||| | ||||       |  || |  ||||  |  | |  | |||| | |  ||             
GAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgagaatcctgtttgcttgagttcatctataattgagaatgttaagattctttttattttctttggaaaagattttcactttctt--ttttgcactgatattcttgtgcatgttggcag