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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAGCCTTAACATCACTAGAGAAAGATATCGGCAAACTAGGCTTGAGCAATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGgtaacaaatttgtacctgtcaaaacacagtttgatatttatggatttttttttcagtcacatcatttttctgaagcataaaagtattctctaaaacatacag

Basic information

species Glycine max
transcript GLYMA04G12500.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700264|gb|BW664490.1|BW664490
EST:     AATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAG                         GATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAAT
genomic: AATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGgtaacaaatt ... aaacatacagGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAAT
EST: gi|15661728|gb|BI699099.1|BI699099
EST:     AATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAG                         GATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAAT
genomic: AATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGgtaacaaatt ... aaacatacagGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAAT
EST: gi|192298146|gb|FG991666.1|FG991666
EST:     AATACAAGAATTATGAAAATATTCCTGGTTCAGGGGACAAGTCGGGGAAG                         GATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTCCAGAAAAAAT
genomic: AATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGgtaacaaatt ... aaacatacagGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAAT
EST: gi|208114007|gb|GD909350.1|GD909350
EST:     CAGGGGACAAGTCGGGGAAG                         GATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTC
genomic: CAGGGGACAAGTCGGGGAAGgtaacaaatt ... aaacatacagGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTC