1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcctgactgattatattcctttggcttattagttttaattgatttaaaagccaattttatatatcattgcaaagctggtaaatagtatgtcacg...
species | Glycine max |
transcript | GLYMA04G08530.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAEST: gi|192331951|gb|FK026735.1|FK026735
genomic: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
EST: AAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAEST: gi|208250509|gb|GE046930.1|GE046930
genomic: AAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
EST: ACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAEST: gi|18713863|gb|BM522747.1|BM522747
genomic: ACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
EST: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAEST: gi|208048593|gb|GD847524.1|GD847524
genomic: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
EST: ACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAEST: gi|23725673|gb|BU760799.1|BU760799
genomic: ACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
EST: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAEST: gi|192315597|gb|FK007425.1|FK007425
genomic: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
EST: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAG GAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
genomic: GGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcct ... ttcatggcagGAAATAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCTCAGCTTGTCAAAGCAAATTCAATTCAAGgtaaaagcctgactgattatattcctttggcttattagttttaattgatttaaaagccaattttatatatcattgcaaagctggtaaatagtatgtcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA